3AFL
Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Chondroitin AC/alginate lyase | 8090365 | 3001005 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | E set domains | 8090368 | 3000070 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Galactose mutarotase-like | 8090366 | 3000035 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16332 | e3aflA9 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF16332 | ECOD (1.6) |
A | PF07940 | e3aflA7 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: PF07940 | ECOD (1.6) |
A | PF16332 | e3aflA8 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: PF16332 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 1.50.10.100 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Chondroitin AC/alginate lyase | CATH (4.3.0) |
A | 2.70.98.70 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16332 | Domain of unknown function (DUF4962) (DUF4962) | Domain of unknown function (DUF4962) | - | Repeat | |
PF07940 | Heparinase II/III-like protein (Hepar_II_III) | Heparinase II/III-like protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Oligo alginate lyase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032518 | Heparinase II, N-terminal | Domain | |
IPR012364 | Oligosaccharide lyase | Family | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR008929 | Chondroitin AC/alginate lyase | Homologous Superfamily | |
IPR012480 | Heparinase II/III-like | Family |