3A9Q | pdb_00003a9q

Crystal Structure Analysis of E173A variant of the soybean ferritin SFER4

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3a9qa_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
B	d3a9qb_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
C	d3a9qc_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
D	d3a9qd_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
E	d3a9qe_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
F	d3a9qf_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
G	d3a9qg_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
H	d3a9qh_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
I	d3a9qi_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
J	d3a9qj_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
K	d3a9qk_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
L	d3a9ql_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
M	d3a9qm_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
N	d3a9qn_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
O	d3a9qo_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
P	d3a9qp_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
Q	d3a9qq_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
R	d3a9qr_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
S	d3a9qs_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
T	d3a9qt_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
U	d3a9qu_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
V	d3a9qv_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
W	d3a9qw_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)
X	d3a9qx_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	soybeans (Glycine max ) [TaxId: 3847 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
E	SCOP2 Family	Ferritin	8063919	4000839	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	Ferritin-like	8063920	3001658	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Ferritin-like	8063920	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Fer4_13	e3a9qA2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (v294.1)
B	Fer4_13	e3a9qB2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (v294.1)
C	adh_short	e3a9qC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
D	adh_short	e3a9qD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
E	adh_short	e3a9qE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
F	Fer4_13	e3a9qF2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (v294.1)
G	adh_short	e3a9qG1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
H	adh_short	e3a9qH1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
I	adh_short	e3a9qI1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
J	adh_short	e3a9qJ1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
K	adh_short	e3a9qK1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
L	adh_short	e3a9qL1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
M	adh_short	e3a9qM1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
N	adh_short	e3a9qN1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
O	adh_short	e3a9qO1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
P	adh_short	e3a9qP1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
Q	adh_short	e3a9qQ1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
R	Fer4_13	e3a9qR2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (v294.1)
S	adh_short	e3a9qS1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
T	Fer4_13	e3a9qT2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (v294.1)
U	adh_short	e3a9qU1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
V	adh_short	e3a9qV1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: adh_short	ECOD (v294.1)
W	Fer4_13	e3a9qW2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (v294.1)
X	Fer4_13	e3a9qX2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Fer4_13	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
M	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
N	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
O	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
P	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
Q	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
R	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
S	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
T	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
U	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
V	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
W	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
X	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Ferritin-4, chloroplastic	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport response to oxidative stress response to stimulus response to stress	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle plastid organelle intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR009040	Ferritin-like diiron domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR001519	Ferritin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR014034	Ferritin, conserved site	Conserved Site

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 3A9Q | pdb_00003a9q

Crystal Structure Analysis of E173A variant of the soybean ferritin SFER4

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

3A9Q | pdb_00003a9q