3A5D | pdb_00003a5d

Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
PSCOP2B SuperfamilyAtpF-like 8033711 3000828 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyAtpF-like 8033711 3000828 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018298 3001034 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyRecA-like P-loop NTPases 8018301 3002019 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRecA-like P-loop NTPases 8018301 3002019 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018298 3001034 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018298 3001034 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRecA-like P-loop NTPases 8018301 3002019 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRecA-like P-loop NTPases 8018301 3002019 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018298 3001034 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRecA-like P-loop NTPases 8018301 3002019 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018298 3001034 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018298 3001034 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRecA-like P-loop NTPases 8018301 3002019 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056935 3000684 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018290 3001034 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRecA-like P-loop NTPases 8018285 3002019 SCOP2B (2022-06-29)
KSCOP2B SuperfamilySingle hybrid motif 8018293 3001880 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRecA-like P-loop NTPases 8018285 3002019 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018290 3001034 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySingle hybrid motif 8018293 3001880 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056935 3000684 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySingle hybrid motif 8018293 3001880 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056935 3000684 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018290 3001034 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRecA-like P-loop NTPases 8018285 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySingle hybrid motif 8018293 3001880 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018290 3001034 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8018285 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056935 3000684 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018290 3001034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056935 3000684 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySingle hybrid motif 8018293 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases 8018285 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySingle hybrid motif 8018293 3001880 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8018290 3001034 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8018285 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8056935 3000684 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
PPDEase_Ie3a5dP1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PDEase_IECOD (v294.1)
HPDEase_Ie3a5dH1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PDEase_IECOD (v294.1)
NPDEase_Ie3a5dN1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PDEase_IECOD (v294.1)
NV-sete3a5dN4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
MPDEase_Ie3a5dM1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PDEase_IECOD (v294.1)
MV-sete3a5dM4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
LPDEase_Ie3a5dL1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PDEase_IECOD (v294.1)
LV-sete3a5dL4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
FV-sete3a5dF4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
EPDEase_Ie3a5dE1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PDEase_IECOD (v294.1)
EV-sete3a5dE4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
DPDEase_Ie3a5dD1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: PDEase_IECOD (v294.1)
DV-sete3a5dD4 A: a/b three-layered sandwichesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (v294.1)
KOTCace_Ne3a5dK1 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: OTCace_NECOD (v294.1)
JOTCace_Ne3a5dJ1 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: OTCace_NECOD (v294.1)
IOTCace_Ne3a5dI1 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: OTCace_NECOD (v294.1)
COTCace_Ne3a5dC1 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: OTCace_NECOD (v294.1)
BOTCace_Ne3a5dB1 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: OTCace_NECOD (v294.1)
AOTCace_Ne3a5dA1 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: OTCace_NECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H, P
PF01990ATP synthase (F/14-kDa) subunit (ATP-synt_F)ATP synthase (F/14-kDa) subunit- Family
G, O
PF01813ATP synthase subunit D (ATP-synt_D)ATP synthase subunit D- Family
D, E, F, L, M
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
D, E, F, L, M
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
D, E, F, L, M
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain
A, B, C, I, J
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
A, B, C, I, J
PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
A, B, C, I, J
PF16886ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn)ATPsynthase alpha/beta subunit barrel-sandwich domainThis barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ...This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel-sandwich domain the C-terminal strand is circularly permuted and occupies the spatial position of the N-terminal strand in other hybrid domains.
Domain
A, B, C, I, J
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H, P
V-type ATP synthase subunit F -
G, O
V-type ATP synthase subunit D -
D, E, F, L, M
V-type ATP synthase beta chain -
A, B, C, I, J
V-type ATP synthase alpha chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H, P
IPR022944ATPase, V1 complex, subunit F, bacterial/archaealFamily
H, P
IPR036906ATPase, V1 complex, subunit F superfamilyHomologous Superfamily
H, P
IPR008218ATPase, V1 complex, subunit FFamily
G, O
IPR002699ATPase, V1 complex, subunit DFamily
D, E, F, L, M
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F, L, M
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
D, E, F, L, M
IPR055190ATP synthase A/B type, C-terminal domainDomain
D, E, F, L, M
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
D, E, F, L, M
IPR022879V-type ATP synthase regulatory subunit B/betaFamily
D, E, F, L, M
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, I, J
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A, B, C, I, J
IPR022878V-type ATP synthase catalytic alpha chainFamily
A, B, C, I, J
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
A, B, C, I, J
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, C, I, J
IPR031686ATPsynthase alpha/beta subunit, barrel-sandwich domainDomain
A, B, C, I, J
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A, B, C, I, J
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
A, B, C, I, J
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A, B, C, I, J
IPR055190ATP synthase A/B type, C-terminal domainDomain
A, B, C, I, J
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily