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 31VO | pdb_000031vo

Crystal structure of amyloid beta 1-15 fragment bound to HLA-DR1

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth D]SCOP2B SuperfamilyMHC antigen-recognition domain 8034737 3000521 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054703 3000071 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyMHC antigen-recognition domain 8055636 3000521 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054705 3000071 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyMHC antigen-recognition domain 8055636 3000521 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054705 3000071 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyMHC antigen-recognition domain 8034737 3000521 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054703 3000071 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyMHC antigen-recognition domain 8040455 3000521 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054671 3000071 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyMHC antigen-recognition domain 8040455 3000521 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054671 3000071 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
C [auth D]		PF00969Class II histocompatibility antigen, beta domain (MHC_II_beta)Class II histocompatibility antigen, beta domainDomain
A [auth B],
C [auth D]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
B [auth A],
D [auth C]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
B [auth A],
D [auth C]		PF00993Class II histocompatibility antigen, alpha domain (MHC_II_alpha)Class II histocompatibility antigen, alpha domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
C [auth D]		Amyloid-beta protein 40,HLA class II histocompatibility antigen, DRB1 beta chain
B [auth A],
D [auth C]		HLA class II histocompatibility antigen, DR alpha chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
C [auth D]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth B],
C [auth D]		IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
A [auth B],
C [auth D]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
A [auth B],
C [auth D]		IPR014745MHC class II, alpha/beta chain, N-terminalHomologous Superfamily
A [auth B],
C [auth D]		IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth B],
C [auth D]		IPR007110Immunoglobulin-like domainDomain
A [auth B],
C [auth D]		IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
A [auth B],
C [auth D]		IPR003597Immunoglobulin C1-setDomain
A [auth B],
C [auth D]		IPR000353MHC class II, beta chain, N-terminalDomain
A [auth B],
C [auth D]		IPR013803Amyloidogenic glycoprotein, amyloid-beta peptideDomain
A [auth B],
C [auth D]		IPR008154Amyloidogenic glycoprotein, extracellularDomain
A [auth B],
C [auth D]		IPR036176E2 domain superfamilyHomologous Superfamily
A [auth B],
C [auth D]		IPR024329Amyloidogenic glycoprotein, E2 domainDomain
A [auth B],
C [auth D]		IPR036669Amyloidogenic glycoprotein, copper-binding domain superfamilyHomologous Superfamily
A [auth B],
C [auth D]		IPR019745Amyloidogenic glycoprotein, intracellular domain, conserved siteConserved Site
A [auth B],
C [auth D]		IPR011178Amyloidogenic glycoprotein, copper-bindingDomain
A [auth B],
C [auth D]		IPR037071Amyloidogenic glycoprotein, amyloid-beta peptide superfamilyHomologous Superfamily
A [auth B],
C [auth D]		IPR020901Proteinase inhibitor I2, Kunitz, conserved siteConserved Site
A [auth B],
C [auth D]		IPR019744Amyloidogenic glycoprotein, copper-binding domain conserved siteConserved Site
A [auth B],
C [auth D]		IPR002223Pancreatic trypsin inhibitor Kunitz domainDomain
A [auth B],
C [auth D]		IPR015849Amyloidogenic glycoprotein, heparin-bindingDomain
A [auth B],
C [auth D]		IPR036454Amyloidogenic glycoprotein, heparin-binding domain superfamilyHomologous Superfamily
A [auth B],
C [auth D]		IPR011993PH-like domain superfamilyHomologous Superfamily
A [auth B],
C [auth D]		IPR019543Beta-amyloid precursor protein C-terminalDomain
A [auth B],
C [auth D]		IPR036880Pancreatic trypsin inhibitor Kunitz domain superfamilyHomologous Superfamily
A [auth B],
C [auth D]		IPR008155Amyloidogenic glycoproteinFamily
B [auth A],
D [auth C]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth A],
D [auth C]		IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
B [auth A],
D [auth C]		IPR003597Immunoglobulin C1-setDomain
B [auth A],
D [auth C]		IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
B [auth A],
D [auth C]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
B [auth A],
D [auth C]		IPR014745MHC class II, alpha/beta chain, N-terminalHomologous Superfamily
B [auth A],
D [auth C]		IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth A],
D [auth C]		IPR007110Immunoglobulin-like domainDomain
B [auth A],
D [auth C]		IPR001003MHC class II, alpha chain, N-terminalDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth A],
D [auth C]		:  P01903