Skip to main content

 30DR | pdb_000030dr

Dynein-Dynactin-RAB11FIP3 complex - composite

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth K]SCOP2B SuperfamilySubunits of heterodimeric actin filament capping protein Capz 8077311 3001499 SCOP2B (2022-06-29)
OA [auth z]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
NA [auth w]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
MA [auth t]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)
LA [auth s]SCOP2B SuperfamilyRoadblock/LC7 domain-like 8033463 3001810 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
U [auth S],
V [auth T]		PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
Q [auth O],
T [auth R]		PF07426Dynactin subunit p22 (Dynactin_p22)Dynactin subunit p22- Family
O [auth M],
P [auth N],
R [auth P],
S [auth Q],
X [auth V]		PF04912Dynamitin (Dynamitin)Dynamitin- Family
O [auth M],
P [auth N],
R [auth P],
S [auth Q],
X [auth V]		PF05783Dynein light intermediate chain (DLIC) (DLIC)Dynein light intermediate chain (DLIC)- Family
O [auth M],
P [auth N],
R [auth P],
S [auth Q],
X [auth V]		PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
N [auth L]PF01115F-actin capping protein, beta subunit (F_actin_cap_B)F-actin capping protein, beta subunit- Family
M [auth K]PF01267F-actin capping protein alpha subunit (F-actin_cap_A)F-actin capping protein alpha subunit- Family
PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
PF00022Actin (Actin)Actin- Family
Z [auth Y]PF05502Dynactin p62 family (Dynactin_p62)Dynactin p62 family- Family
Y [auth W]PF03259Roadblock/LC7 domain (Robl_LC7)Roadblock/LC7 domainThis family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.
Domain
Y [auth W]PF21711Dynactin subunit 5 (DCTN5)Dynactin subunit 5- Repeat
A [auth 1],
B [auth 2]		PF09457FIP domain (RBD-FIP)FIP domain- Motif
A [auth 1],
B [auth 2]		PF25450Rab11-FIP3-like domain (Rab11-FIP3)Rab11-FIP3-like domainThis domain is found in human Rab11 family-interacting protein 3 (Rab11-FIP3) and similar proteins mainly found in animals. Proteins in this family are involved in regulating endocytic trafficking, cytokinesis, and intracellular ciliogenesis by facil ...This domain is found in human Rab11 family-interacting protein 3 (Rab11-FIP3) and similar proteins mainly found in animals. Proteins in this family are involved in regulating endocytic trafficking, cytokinesis, and intracellular ciliogenesis by facilitating membrane delivery. This domain is predicted to adopt an alpha-helical configuration.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
U [auth S],
V [auth T]		Dynactin subunit 1
Q [auth O],
T [auth R]		Dynactin subunit 3-
O [auth M],
P [auth N],
R [auth P],
S [auth Q],
X [auth V]		Dynactin subunit 2-
N [auth L]F-actin-capping protein subunit beta
M [auth K]Capping protein (Actin filament) muscle Z-line, alpha 1
L [auth J]Arp11
J [auth H]Actin, cytoplasmic 1
ARP1 actin related protein 1 homolog A
LA [auth s],
MA [auth t],
NA [auth w],
OA [auth z]		Dynein light chain roadblock-type 1
EA [auth j],
JA [auth q],
KA [auth r]		Cytoplasmic dynein 1 light intermediate chain 2
CA [auth g],
DA [auth h],
HA [auth o],
IA [auth p]		Isoform 2C of Cytoplasmic dynein 1 intermediate chain 2
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		Cytoplasmic dynein 1 heavy chain 1
Z [auth Y]Dynactin subunit 4-
Y [auth W]Dynactin subunit 5-
W [auth U]Dynactin 6
A [auth 1],
B [auth 2]		Rab11 family-interacting protein 3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
U [auth S],
V [auth T]		IPR000938CAP Gly-rich domainDomain
U [auth S],
V [auth T]		IPR036859CAP Gly-rich domain superfamilyHomologous Superfamily
U [auth S],
V [auth T]		IPR022157Dynein associated proteinDomain
U [auth S],
V [auth T]		IPR059265Dynactin subunit 1, DUF8221Domain
Q [auth O],
T [auth R]		IPR009991Dynactin subunit 3Family
O [auth M],
P [auth N],
R [auth P],
S [auth Q],
X [auth V]		IPR028133DynamitinFamily
N [auth L]IPR019771F-actin capping protein, beta subunit, conserved siteConserved Site
N [auth L]IPR001698F-actin-capping protein subunit betaFamily
N [auth L]IPR043175F-actin-capping protein subunit beta, N-terminal domainHomologous Superfamily
N [auth L]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
N [auth L]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
M [auth K]IPR002189F-actin-capping protein subunit alphaFamily
M [auth K]IPR042489F-actin capping protein, alpha subunit, domain 1Homologous Superfamily
M [auth K]IPR037282F-actin-capping protein subunit alpha/betaHomologous Superfamily
M [auth K]IPR017865F-actin capping protein, alpha subunit, conserved siteConserved Site
M [auth K]IPR042276F-actin-capping protein subunit alpha/beta, domain 2Homologous Superfamily
L [auth J]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
L [auth J]IPR004000Actin familyFamily
J [auth H]IPR020902Actin/actin-like conserved siteConserved Site
J [auth H]IPR004001Actin, conserved siteConserved Site
J [auth H]IPR043129ATPase, nucleotide binding domainHomologous Superfamily
J [auth H]IPR004000Actin familyFamily
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
LA [auth s],
MA [auth t],
NA [auth w],
OA [auth z]		IPR016561Dynein light chain roadblock-type 1/2Family
LA [auth s],
MA [auth t],
NA [auth w],
OA [auth z]		IPR004942Roadblock/LAMTOR2 domainDomain
EA [auth j],
JA [auth q],
KA [auth r]		IPR022780Dynein family light intermediate chainFamily
EA [auth j],
JA [auth q],
KA [auth r]		IPR008467Dynein 1 light intermediate chainFamily
EA [auth j],
JA [auth q],
KA [auth r]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
CA [auth g],
DA [auth h],
HA [auth o],
IA [auth p]		IPR025956Cytoplasmic dynein 1 intermediate chain 1/2Family
CA [auth g],
DA [auth h],
HA [auth o],
IA [auth p]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
CA [auth g],
DA [auth h],
HA [auth o],
IA [auth p]		IPR001680WD40 repeatRepeat
CA [auth g],
DA [auth h],
HA [auth o],
IA [auth p]		IPR050687Dynein axonemal intermediate chain 1/2/3/4Family
CA [auth g],
DA [auth h],
HA [auth o],
IA [auth p]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR026983Dynein heavy chainFamily
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR013602Dynein heavy chain, linkerDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR041658Dynein heavy chain, AAA lid domainDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR042219Dynein heavy chain, AAA lid domain superfamilyHomologous Superfamily
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR041228Dynein heavy chain, C-terminal domainDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR054354Dynein 2 heavy chain 1, cytoplasmic, ATPase lid domainDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR003593AAA+ ATPase domainDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR041466Dynein heavy chain, AAA 5 extension domainDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR024743Dynein heavy chain, coiled coil stalkDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR013594Dynein heavy chain, tailDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR004273Dynein heavy chain, D6 P-loop domainDomain
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		IPR024317Dynein heavy chain, AAA module D4Domain
Z [auth Y]IPR008603Dynactin subunit 4Family
Y [auth W]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
Y [auth W]IPR047125Dynactin subunit 5Family
W [auth U]IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
W [auth U]IPR027777Dynactin subunit 6Family
A [auth 1],
B [auth 2]		IPR057316Rab11-FIP3/4 domainDomain
A [auth 1],
B [auth 2]		IPR037245FIP-RBD, C-terminal domain superfamilyHomologous Superfamily
A [auth 1],
B [auth 2]		IPR051977Rab11 family-interacting protein 3/4Family
A [auth 1],
B [auth 2]		IPR002048EF-hand domainDomain
A [auth 1],
B [auth 2]		IPR011992EF-hand domain pairHomologous Superfamily
A [auth 1],
B [auth 2]		IPR019018Rab-binding domain FIP-RBDDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
LA [auth s],
MA [auth t],
NA [auth w],
OA [auth z]		:  Q9NP97
EA [auth j],
JA [auth q],
KA [auth r]		:  O43237
CA [auth g],
DA [auth h],
HA [auth o],
IA [auth p]		:  Q13409
AA [auth e],
BA [auth f],
FA [auth m],
GA [auth n]		:  Q14204
A [auth 1],
B [auth 2]		:  O75154