2YMS | pdb_00002yms

Structure and assembly of a b-propeller with nine blades and a new conserved repetitive sequence motif

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	YadA_stalk	e2ymsA01	A: a/b three-layered sandwiches	X: Caspase-like	H: Caspase-like	T: Caspase-like	F: YadA_stalk	ECOD (v294.1)
B	YadA_stalk	e2ymsB01	A: a/b three-layered sandwiches	X: Caspase-like	H: Caspase-like	T: Caspase-like	F: YadA_stalk	ECOD (v294.1)
C	YadA_stalk	e2ymsC01	A: a/b three-layered sandwiches	X: Caspase-like	H: Caspase-like	T: Caspase-like	F: YadA_stalk	ECOD (v294.1)
D	YadA_stalk	e2ymsD01	A: a/b three-layered sandwiches	X: Caspase-like	H: Caspase-like	T: Caspase-like	F: YadA_stalk	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
A	2.40.128.630	Mainly Beta	Beta Barrel	Lipocalin	CATH (4.3.0)
B	2.40.10.480	Mainly Beta	Beta Barrel	Thrombin, subunit H	CATH (4.3.0)
C	2.40.10.480	Mainly Beta	Beta Barrel	Thrombin, subunit H	CATH (4.3.0)
D	2.40.10.480	Mainly Beta	Beta Barrel	Thrombin, subunit H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13360	Outer membrane protein assembly factor BamB (PQQ_2)	Outer membrane protein assembly factor BamB	-	Repeat
B	PF13360	Outer membrane protein assembly factor BamB (PQQ_2)	Outer membrane protein assembly factor BamB	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB	identical protein binding protein binding binding	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane	cellular anatomical structure membrane cell outer membrane external encapsulating structure extracellular region cell envelope outer membrane protein-containing complex periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex extracellular protein-containing complex
B	OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB	identical protein binding protein binding binding	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane	cellular anatomical structure membrane cell outer membrane external encapsulating structure extracellular region cell envelope outer membrane protein-containing complex periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex extracellular protein-containing complex
C	OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB	identical protein binding protein binding binding	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane	cellular anatomical structure membrane cell outer membrane external encapsulating structure extracellular region cell envelope outer membrane protein-containing complex periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex extracellular protein-containing complex
D	OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB	identical protein binding protein binding binding	membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane membrane organization membrane biogenesis membrane assembly cellular component organization cellular component biogenesis cellular component assembly cellular process cellular component organization or biogenesis cell envelope organization Gram-negative-bacterium-type cell outer membrane assembly external encapsulating structure organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization localization macromolecule localization intracellular protein localization protein insertion into membrane	cellular anatomical structure membrane cell outer membrane external encapsulating structure extracellular region cell envelope outer membrane protein-containing complex periplasmic side of cell outer membrane membrane protein complex side of membrane Bam protein complex extracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
A	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A	IPR017687	Outer membrane protein assembly factor BamB	Family
A	IPR002372	Pyrrolo-quinoline quinone repeat domain	Domain
A	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
B	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
B	IPR017687	Outer membrane protein assembly factor BamB	Family
B	IPR002372	Pyrrolo-quinoline quinone repeat domain	Domain
B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
C	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
C	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
C	IPR017687	Outer membrane protein assembly factor BamB	Family
C	IPR002372	Pyrrolo-quinoline quinone repeat domain	Domain
C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
D	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
D	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
D	IPR017687	Outer membrane protein assembly factor BamB	Family
D	IPR002372	Pyrrolo-quinoline quinone repeat domain	Domain
D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily