2YGM

THE X-RAY CRYSTAL STRUCTURE OF TANDEM CBM51 MODULES OF SP3GH98, THE FAMILY 98 GLYCOSIDE HYDROLASE FROM STREPTOCOCCUS PNEUMONIAE SP3-BS71, IN COMPLEX WITH THE BLOOD GROUP B ANTIGEN


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF08305e2ygmA3 A: beta sandwichesX: jelly-rollH: Galactose-binding domain-like (From Topology)T: Galactose-binding domain-likeF: PF08305ECOD (1.6)
BPF08305e2ygmB3 A: beta sandwichesX: jelly-rollH: Galactose-binding domain-like (From Topology)T: Galactose-binding domain-likeF: PF08305ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.1060 Mainly Beta Sandwich Jelly Rolls NPCBM/NEW2 domainCATH (4.3.0)
B2.60.120.1060 Mainly Beta Sandwich Jelly Rolls NPCBM/NEW2 domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF08305NPCBM/NEW2 domain (NPCBM)NPCBM/NEW2 domainThis novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins [1]. This domain has also been called the NEW2 domain [2]. NPCBM domains found in bacterial conflict systems are predi ...This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins [1]. This domain has also been called the NEW2 domain [2]. NPCBM domains found in bacterial conflict systems are predicted to interact with invasive molecules and recruit downstream effectors [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
BLOOD GROUP A-AND B-CLEAVING ENDO-BETA-GALACTOSIDASE -