2WCD | pdb_00002wcd

Crystal structure of the assembled cytolysin A pore

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bacterial hemolysins	8039660	3001673	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	HlyE	e2wcdH1	A: alpha bundles	X: Bacterial hemolysins-like	H: Bacterial hemolysins (From Topology)	T: Bacterial hemolysins	F: HlyE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
S	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
X	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
W	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
V	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
U	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
T	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
R	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
Q	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
P	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
O	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
N	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
M	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
L	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
K	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
J	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
I	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
H	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
F	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
E	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
D	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
C	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
B	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)
A	1.20.1170.10	Mainly Alpha	Up-down Bundle	Hemolysin E	Chain: A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	HEMOLYSIN E, CHROMOSOMAL	identical protein binding protein binding binding toxin activity	hemolysis in another organism biological process involved in interspecies interaction between organisms cytolysis in another organism cellular process disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing	cellular anatomical structure membrane host cell plasma membrane host cellular component host cell part host cell membrane other organism part periplasmic space extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR027018	Hemolysin E	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	OPM	Transmembrane	Alpha-helical polytopic	Pore-forming alpha-helical toxins	Pore-forming haemolysin E

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Adventitious Membrane Proteins: Alpha-helical Pore-forming Toxins.	Cytolysin A (ClyA, aka HlyE)