2VDF | pdb_00002vdf

Structure of the OpcA adhesion from Neisseria meningitidis determined by crystallization from the cubic mesophase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2vdfa_	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	OMPT-like	Outer membrane adhesin/invasin OpcA	Outer membrane adhesin/invasin OpcA	(Neisseria meningitidis ) [TaxId: 487 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Outer membrane adhesin/invasin OpcA	8025111	4002901	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	OMPT-like	8037490	3001111	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	OpcA	e2vdfA1	A: beta barrels	X: Outer membrane meander beta-barrels	H: OMPT-like (From Topology)	T: OMPT-like	F: OpcA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.128.100	Mainly Beta	Beta Barrel	Lipocalin	OPCA outer membrane adhesin/invasin	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	OUTER MEMBRANE PROTEIN	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR020080	Outer membrane adhesin/peptidase omptin	Homologous Superfamily
A	IPR009876	Outer membrane adhesin OpcA	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.