2TBV | pdb_00002tbv

STRUCTURE OF TOMATO BUSHY STUNT VIRUS. V. COAT PROTEIN SEQUENCE DETERMINATION AND ITS STRUCTURAL IMPLICATIONS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2tbva_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tombusviridae-like VP	Tombusvirus coat protein	(Tomato bushy stunt virus ) [TaxId: 12145 ],	SCOPe (2.08)
B	d2tbvb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tombusviridae-like VP	Tombusvirus coat protein	(Tomato bushy stunt virus ) [TaxId: 12145 ],	SCOPe (2.08)
C	d2tbvc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tombusviridae-like VP	Tombusvirus coat protein	(Tomato bushy stunt virus ) [TaxId: 12145 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Tombusviridae-like VP	8028407	4003478	SCOP2 (2022-06-29)
A	SCOP2 Family	CNV-CP protruding P-domain-like	8089974	4007693	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8040786	3000918	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CNV-CP protruding P-domain-like	8089975	3002408	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089975	3002408	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8040786	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CNV-CP protruding P-domain-like	8089975	3002408	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8040786	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Viral_coat	e2tbvA2	A: a/b three-layered sandwiches	X: Caspase-like	H: Caspase-like	T: Caspase-like	F: Viral_coat	ECOD (v294.1)
A	Peptidase_C80	e2tbvA3	A: a/b three-layered sandwiches	X: Caspase-like	H: Caspase-like	T: Caspase-like	F: Peptidase_C80	ECOD (v294.1)
B	HypA	e2tbvB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F: HypA	ECOD (v294.1)
C	SRP54_N	e2tbvC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F: SRP54_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	TOMATO BUSHY STUNT VIRUS	structural molecule activity RNA binding binding nucleic acid binding	-	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C	IPR000937	Icosahedral viral capsid protein, S domain	Domain
A, B, C	IPR055068	Coat protein, P (projecting) domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.