2RLD | pdb_00002rld

CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM S23 RIBOSOMAL PROTEIN FAMILY (BT_0352) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.70 A RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d2rlde_	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
D	d2rldd_	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
C	d2rldc_	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
B	d2rldb_	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
A	d2rlda1	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
A	d2rlda2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2B (2022-06-29)
C	SCOP2 Family	IVS-encoded protein-like	8024569	4001332	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E		e2rldE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
D		e2rldD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
C		e2rldC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
B		e2rldB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
A	23S_rRNA_IVP	e2rldA1	A: alpha bundles	X: Bromodomain-like	H: IVS-encoded protein-like	T: IVS-encoded protein-like	F: 23S_rRNA_IVP	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)
D	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)
C	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)
B	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)
A	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF05635	23S rRNA-intervening sequence protein (23S_rRNA_IVP)	23S rRNA-intervening sequence protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Uncharacterized protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR012657	23S rRNA-intervening sequence protein	Family
A, B, C, D, E	IPR036583	23S rRNA-intervening sequence superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.