2RLD | pdb_00002rld

CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM S23 RIBOSOMAL PROTEIN FAMILY (BT_0352) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.70 A RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d2rlde_	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
D	d2rldd_	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
C	d2rldc_	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
B	d2rldb_	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
A	d2rlda1	All alpha proteins	Bromodomain-like	IVS-encoded protein-like	IVS-encoded protein-like	Uncharacterized protein BT0352	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)
A	d2rlda2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2B (2022-06-29)
C	SCOP2 Family	IVS-encoded protein-like	8024569	4001332	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	IVS-encoded protein-like	8036948	3001311	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	23S_rRNA_IVP	e2rldE1	A: alpha bundles	X: Bromodomain-like	H: IVS-encoded protein-like (From Topology)	T: IVS-encoded protein-like	F: 23S_rRNA_IVP	ECOD (1.6)
D	23S_rRNA_IVP	e2rldD1	A: alpha bundles	X: Bromodomain-like	H: IVS-encoded protein-like (From Topology)	T: IVS-encoded protein-like	F: 23S_rRNA_IVP	ECOD (1.6)
C	23S_rRNA_IVP	e2rldC1	A: alpha bundles	X: Bromodomain-like	H: IVS-encoded protein-like (From Topology)	T: IVS-encoded protein-like	F: 23S_rRNA_IVP	ECOD (1.6)
B	23S_rRNA_IVP	e2rldB1	A: alpha bundles	X: Bromodomain-like	H: IVS-encoded protein-like (From Topology)	T: IVS-encoded protein-like	F: 23S_rRNA_IVP	ECOD (1.6)
A	23S_rRNA_IVP	e2rldA1	A: alpha bundles	X: Bromodomain-like	H: IVS-encoded protein-like (From Topology)	T: IVS-encoded protein-like	F: 23S_rRNA_IVP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)
D	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)
C	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)
B	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)
A	1.20.1440.60	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	23S rRNA-intervening sequence	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF05635	23S rRNA-intervening sequence protein (23S_rRNA_IVP)	23S rRNA-intervening sequence protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	Uncharacterized protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR012657	23S rRNA-intervening sequence protein	Family
A, B, C, D, E	IPR036583	23S rRNA-intervening sequence superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.