2R1F

Crystal structure of predicted aminodeoxychorismate lyase from Escherichia coli

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YceG N-terminal domain-like	8050653	4006990	SCOP2 (2022-06-29)
A	SCOP2 Family	YceG C-terminal domain-like	8091109	4007724	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	LysM domain-like	8091105	3001938	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Germination-specific lytic tansglycosylase SleB catalytic domain-like	8091111	3002487	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	LysM domain-like	8091105	3001938	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Germination-specific lytic tansglycosylase SleB catalytic domain-like	8091111	3002487	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	YceG_3rd	e2r1fA1	A: a+b complex topology	X: spore cortex-lytic enzyme catalytic domain (From Topology)	H: spore cortex-lytic enzyme catalytic domain (From Topology)	T: spore cortex-lytic enzyme catalytic domain	F: YceG_3rd	ECOD (1.6)
A	PRK10270	e2r1fA3	A: a+b complex topology	X: Lmo1499 protein N-terminal domains (From Topology)	H: Lmo1499 protein N-terminal domains (From Topology)	T: Lmo1499 protein N-terminal domains	F: PRK10270	ECOD (1.6)
A	YceG_2nd_1	e2r1fA2	A: a+b complex topology	X: Lmo1499 protein N-terminal domains (From Topology)	H: Lmo1499 protein N-terminal domains (From Topology)	T: Lmo1499 protein N-terminal domains	F: YceG_2nd_1	ECOD (1.6)
B	YceG_3rd	e2r1fB3	A: a+b complex topology	X: spore cortex-lytic enzyme catalytic domain (From Topology)	H: spore cortex-lytic enzyme catalytic domain (From Topology)	T: spore cortex-lytic enzyme catalytic domain	F: YceG_3rd	ECOD (1.6)
B	PRK10270	e2r1fB2	A: a+b complex topology	X: Lmo1499 protein N-terminal domains (From Topology)	H: Lmo1499 protein N-terminal domains (From Topology)	T: Lmo1499 protein N-terminal domains	F: PRK10270	ECOD (1.6)
B	YceG_2nd_1	e2r1fB1	A: a+b complex topology	X: Lmo1499 protein N-terminal domains (From Topology)	H: Lmo1499 protein N-terminal domains (From Topology)	T: Lmo1499 protein N-terminal domains	F: YceG_2nd_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.160.60	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	Classic Zinc Finger	CATH (4.3.0)
B	3.30.160.60	Alpha Beta	2-Layer Sandwich	Double Stranded RNA Binding Domain	Classic Zinc Finger	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02618	YceG-like family (YceG)	YceG-like family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Predicted aminodeoxychorismate lyase	lytic transglycosylase activity peptidoglycan muralytic activity lytic endotransglycosylase activity lyase activity catalytic activity carbon-oxygen lyase activity, acting on polysaccharides carbon-oxygen lyase activity	organic substance metabolic process organonitrogen compound metabolic process glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process macromolecule metabolic process cellular biosynthetic process cell wall organization or biogenesis organonitrogen compound biosynthetic process cellular component biogenesis organic substance biosynthetic process glycosaminoglycan biosynthetic process organic substance metabolic process organonitrogen compound metabolic process glycosaminoglycan metabolic process aminoglycan metabolic process peptidoglycan metabolic process carbohydrate derivative metabolic process metabolic process macromolecule metabolic process cellular biosynthetic process cell wall organization or biogenesis organonitrogen compound biosynthetic process cellular component biogenesis organic substance biosynthetic process glycosaminoglycan biosynthetic process cellular component organization or biogenesis carbohydrate derivative biosynthetic process peptidoglycan-based cell wall biogenesis cellular metabolic process macromolecule biosynthetic process peptidoglycan biosynthetic process cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process aminoglycan biosynthetic process cellular process cellular component organization cell wall organization external encapsulating structure organization	cell periphery plasma membrane membrane cellular anatomical entity outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR003770	Endolytic murein transglycosylase	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.