2QLC | pdb_00002qlc

The crystal structure of DNA repair protein RadC from Chlorobium tepidum TLS

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	JAB1/MPN domain-like	8053288	3001105	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	JAB1/MPN domain-like	8053288	3001105	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	JAB1/MPN domain-like	8053288	3001105	SCOP2B (2022-06-29)
E	SCOP2 Family	RadC JAB domain-like	8045115	4004298	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	JAB1/MPN domain-like	8053288	3001105	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	JAB1/MPN domain-like	8053288	3001105	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	JAB1/MPN domain-like	8053288	3001105	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	JAB1/MPN domain-like	8053288	3001105	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	JAB1/MPN domain-like	8053288	3001105	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	PK_Tyr_Ser-Thr	e2qlcH1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: PK_Tyr_Ser-Thr	ECOD (v294.1)
G	PK_Tyr_Ser-Thr	e2qlcG1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: PK_Tyr_Ser-Thr	ECOD (v294.1)
F	PK_Tyr_Ser-Thr	e2qlcF1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: PK_Tyr_Ser-Thr	ECOD (v294.1)
E	PK_Tyr_Ser-Thr	e2qlcE1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: PK_Tyr_Ser-Thr	ECOD (v294.1)
D	PK_Tyr_Ser-Thr	e2qlcD1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: PK_Tyr_Ser-Thr	ECOD (v294.1)
C	PK_Tyr_Ser-Thr	e2qlcC1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: PK_Tyr_Ser-Thr	ECOD (v294.1)
B	PK_Tyr_Ser-Thr	e2qlcB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: PK_Tyr_Ser-Thr	ECOD (v294.1)
A	PmrD	e2qlcA1	A: a/b three-layered sandwiches	X: Profilin-like	H: sensor domains	T: sensor domains	F: PmrD	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
G	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
F	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
E	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
D	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
C	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
B	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)
A	3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF04002	RadC-like JAB domain (RadC)	RadC-like JAB domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	DNA repair protein radC homolog	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR037518	MPN domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR010994	RuvA domain 2-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020891	Uncharacterised protein family UPF0758, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR046778	UPF0758, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR025657	RadC-like JAB domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001405	Uncharacterised protein family UPF0758	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.