2PYB | pdb_00002pyb

Napa protein from borrelia burgdorferi

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2pyba_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	( ) [TaxId: ], (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) ) [TaxId: 224326 ],	SCOPe (2.08)
D	d2pybd_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	( ) [TaxId: ], (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) ) [TaxId: 224326 ],	SCOPe (2.08)
C	d2pybc_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	( ) [TaxId: ], (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) ) [TaxId: 224326 ],	SCOPe (2.08)
B	d2pybb_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	( ) [TaxId: ], (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) ) [TaxId: 224326 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Ferritin	8075835	4000839	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ferritin-like	8075836	3001658	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8075836	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8075836	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8075836	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2pybA1	A: Profilin-like	X: sensor domains	H: sensor domains	T: Resolvase	F:	ECOD (20:10:01)
D		e2pybD1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Lipocalin	F:	ECOD (20:10:01)
C		e2pybC1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Lipocalin	F:	ECOD (20:10:01)
B		e2pybB1	A: HTH	X: HTH	H: tetra-helical, lambda repressor-like	T: Lipocalin	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Neutrophil activating protein	cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D	IPR002177	DNA-binding protein Dps	Family
A, B, C, D	IPR008331	Ferritin/DPS domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.