2PYB | pdb_00002pyb

Napa protein from borrelia burgdorferi

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2pybd_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	( ) [TaxId: ], (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) ) [TaxId: 224326 ],	SCOPe (2.08)
C	d2pybc_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	( ) [TaxId: ], (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) ) [TaxId: 224326 ],	SCOPe (2.08)
B	d2pybb_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	( ) [TaxId: ], (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) ) [TaxId: 224326 ],	SCOPe (2.08)
A	d2pyba_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	( ) [TaxId: ], (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) ) [TaxId: 224326 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Ferritin-like	8075836	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8075836	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8075836	3001658	SCOP2B (2022-06-29)
A	SCOP2 Family	Ferritin	8075835	4000839	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ferritin-like	8075836	3001658	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ferritin_1	e2pybD1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
C	Ferritin_1	e2pybC1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
B	Ferritin_1	e2pybB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
A	Ferritin_1	e2pybA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Neutrophil activating protein	cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D	IPR002177	DNA-binding protein Dps	Family
A, B, C, D	IPR008331	Ferritin/DPS domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.