2N5M | pdb_00002n5m

Unveiling the structural determinants of KIAA0323 binding preference for NEDD8

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2n5mA1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: zf-C3HC4_2	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF23054	N4BP1, C-terminal UBA domain (UBA_N4BP1_C)	N4BP1, C-terminal UBA domain	This domain is found in the N4BP1 family which includes the NEDD4-binding protein 1, KHNYN and other related proteins. This domain has a significant sequence and structural similarity to known UBA domains. It was shown that is responsible for binding ...	This domain is found in the N4BP1 family which includes the NEDD4-binding protein 1, KHNYN and other related proteins. This domain has a significant sequence and structural similarity to known UBA domains. It was shown that is responsible for binding ubiquitin-like protein NEDD8.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein KHNYN	endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity RNA binding binding nucleic acid binding mRNA binding	-	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle cytoplasm supramolecular complex ribonucleoprotein granule membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR056578	N4BP1, C-terminal UBA domain	Domain
A	IPR056630	N4BP1, second type I KH-domain	Domain
A	IPR036612	K Homology domain, type 1 superfamily	Homologous Superfamily
A	IPR056629	N4BP1, first type I KH-domain	Domain
A	IPR051101	ZC3H12/N4BP1 Ribonuclease and Regulator	Family
A	IPR021869	Ribonuclease Zc3h12a-like, NYN domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: O15037	atypical teratoid rhabdoid tumor osteosarcoma tuberculosis glioblastoma ovarian cancer lung cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.