Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyNucleoside hydrolase8032650 3001240 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyNucleoside hydrolase8032650 3001240 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyNucleoside hydrolase8032650 3001240 SCOP2B (2022-06-29)
ASCOP2 FamilyNucleoside hydrolase8020270 4000751 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyNucleoside hydrolase8032650 3001240 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BIU_nuc_hydroe2masB1 A: a/b three-layered sandwichesX: Nucleoside hydrolase (From Topology)H: Nucleoside hydrolase (From Topology)T: Nucleoside hydrolaseF: IU_nuc_hydroECOD (1.6)
CIU_nuc_hydroe2masC1 A: a/b three-layered sandwichesX: Nucleoside hydrolase (From Topology)H: Nucleoside hydrolase (From Topology)T: Nucleoside hydrolaseF: IU_nuc_hydroECOD (1.6)
DIU_nuc_hydroe2masD1 A: a/b three-layered sandwichesX: Nucleoside hydrolase (From Topology)H: Nucleoside hydrolase (From Topology)T: Nucleoside hydrolaseF: IU_nuc_hydroECOD (1.6)
AIU_nuc_hydroe2masA1 A: a/b three-layered sandwichesX: Nucleoside hydrolase (From Topology)H: Nucleoside hydrolase (From Topology)T: Nucleoside hydrolaseF: IU_nuc_hydroECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF01156Inosine-uridine preferring nucleoside hydrolase (IU_nuc_hydro)Inosine-uridine preferring nucleoside hydrolase- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
inosine-uridine preferring nucleoside hydrolase  M-CSA #39

Protozoa depend on purine salvage for nucleic acid synthesis. An abundant salvage enzyme in Crithidia fasciculata is the inosine-uridine nucleoside hydrolase (IU-NH). The enzyme is homotetrameric (4 x 34 kDa subunits) and exhibits no known allosteric properties.

N-ribosyl hydrolase catalyses the hydrolysis of carbon-nitrogen bonds in all commonly occurring purine and pyrimidine nucleosides via an oxocarbenium-ion transition state. The hydrolysis forms ribose and the associated base. The enzyme has a preference for inosine and uridine as substrates. The substrate specificity and kinetic constants are consistent with His241 acting as a proton donor to activate the hypoxanthine leaving group. Although the enzyme is established as a member of the nonspecific nucleoside hydrolases, it has a unique substrate specificity. Its mechanism includes a tightly bound catalytic Ca(II).

The enzyme is involved in the purine salvage pathways of protozoan parasites and has not been found in mammals, since mammals possess an endogenous biochemical pathway which releases nucleosides by phospholysis, catalysed by nucleoside phosphorylase. Protozoan parasites lack de novo purine biosynthesis pathways and are dependent upon exogenous purines, salvaged from a host organism.

Defined by 8 residues: ASP:A-9 [auth A-10]ASP:A-14 [auth A-15]ASN:A-38 [auth A-39]THR:A-125 [auth A-126]PHE:A-166 [auth A-167]ASN:A-167 [auth A-168]HIS:A-240 [auth A-241]ASP:A-241 [auth A-242]
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