2JSX | pdb_00002jsx

Solution structure of the E. coli Tat proofreading chaperone protein NapD

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	NapD-like	8045160	4004330	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Dimeric alpha+beta barrel	8057004	3000089	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HhH-GPD	e2jsxA2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: HhH-GPD	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.920	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03927	NapD protein (NapD)	NapD protein	Uncharacterized protein involved in formation of periplasmic nitrate reductase.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein napD	signal sequence binding binding peptide binding	negative regulation of protein transport regulation of localization regulation of biological process establishment of protein localization regulation of protein localization regulation of transport transport biological regulation regulation of establishment of protein localization negative regulation of biological process negative regulation of establishment of protein localization negative regulation of transport regulation of protein transport establishment of localization localization negative regulation of protein transport regulation of localization regulation of biological process establishment of protein localization regulation of protein localization regulation of transport transport biological regulation regulation of establishment of protein localization negative regulation of biological process negative regulation of establishment of protein localization negative regulation of transport regulation of protein transport establishment of localization localization protein transport macromolecule localization intracellular protein localization negative regulation of protein localization	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR005623	Chaperone NapD, nitrate reductase assembly	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.