2IOU | pdb_00002iou

Major Tropism Determinant P1 (Mtd-P1) Variant Complexed with Bordetella brochiseptica Virulence Factor Pertactin extracellular domain (Prn-E).

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d2iouh_	All beta proteins	Single-stranded right-handed beta-helix	Pectin lyase-like	Virulence factor P.69 pertactin	automated matches	(Bordetella bronchiseptica RB50 ) [TaxId: 257310 ],	SCOPe (2.08)
G	d2ioug_	All beta proteins	Single-stranded right-handed beta-helix	Pectin lyase-like	Virulence factor P.69 pertactin	automated matches	(Bordetella bronchiseptica RB50 ) [TaxId: 257310 ],	SCOPe (2.08)
F	d2iouf1	All beta proteins	Pseudo beta-prism I	Bacteriophage trimeric proteins domain	Mtd domain-like	Major tropism determinant (Mtd), N-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
F	d2iouf2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Mtd variable domain	Major tropism determinant (Mtd), C-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
E	d2ioue1	All beta proteins	Pseudo beta-prism I	Bacteriophage trimeric proteins domain	Mtd domain-like	Major tropism determinant (Mtd), N-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
E	d2ioue2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Mtd variable domain	Major tropism determinant (Mtd), C-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
D	d2ioud1	All beta proteins	Pseudo beta-prism I	Bacteriophage trimeric proteins domain	Mtd domain-like	Major tropism determinant (Mtd), N-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
D	d2ioud2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Mtd variable domain	Major tropism determinant (Mtd), C-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
C	d2iouc1	All beta proteins	Pseudo beta-prism I	Bacteriophage trimeric proteins domain	Mtd domain-like	Major tropism determinant (Mtd), N-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
C	d2iouc2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Mtd variable domain	Major tropism determinant (Mtd), C-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
B	d2ioub1	All beta proteins	Pseudo beta-prism I	Bacteriophage trimeric proteins domain	Mtd domain-like	Major tropism determinant (Mtd), N-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
B	d2ioub2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Mtd variable domain	Major tropism determinant (Mtd), C-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
A	d2ioua1	All beta proteins	Pseudo beta-prism I	Bacteriophage trimeric proteins domain	Mtd domain-like	Major tropism determinant (Mtd), N-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)
A	d2ioua2	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Mtd variable domain	Major tropism determinant (Mtd), C-terminal domain	(Rauchvirus BPP1 ) [TaxId: 194699 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2 Family	Virulence factor P.69 pertactin	8077547	4002821	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	Pectin lyase-like	8077548	3001746	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	C-type lectin-like	8034887	3001261	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8034885	3000915	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8034885	3000915	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8034887	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8034887	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8034885	3000915	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	C-type lectin-like	8034887	3001261	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8034885	3000915	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8034887	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8034885	3000915	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8034887	3001261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8034885	3000915	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Rpf1_C	e2iouH1	A: alpha bundles	X: HTH	H: Nudix	T: Nudix	F: Rpf1_C	ECOD (develop294)
G	TGF_beta	e2iouG1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: TGF_beta	ECOD (develop294)
F	C4	e2iouF3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: C4	ECOD (develop294)
F	ArgJ	e2iouF1	A: alpha bundles	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ArgJ	ECOD (develop294)
E	C4	e2iouE3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: C4	ECOD (develop294)
E	ArgJ	e2iouE1	A: alpha bundles	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ArgJ	ECOD (develop294)
D	C4	e2iouD3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: C4	ECOD (develop294)
D	ArgJ	e2iouD1	A: alpha bundles	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ArgJ	ECOD (develop294)
C	C4	e2iouC3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: C4	ECOD (develop294)
C	ArgJ	e2iouC1	A: alpha bundles	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ArgJ	ECOD (develop294)
B	C4	e2iouB3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: C4	ECOD (develop294)
B	ArgJ	e2iouB1	A: alpha bundles	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ArgJ	ECOD (develop294)
A	C4	e2iouA3	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: C4	ECOD (develop294)
A	ArgJ	e2iouA1	A: alpha bundles	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: ArgJ	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.160.20.20	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.3.0)
G	2.160.20.20	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.3.0)
F	2.10.10.30	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)		CATH (4.3.0)
F	2.80.20.10	Mainly Beta	Trefoil	Tail fiber receptor-binding protein	Tail fiber receptor-binding protein	CATH (4.3.0)
F	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)
E	2.10.10.30	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)		CATH (4.3.0)
E	2.80.20.10	Mainly Beta	Trefoil	Tail fiber receptor-binding protein	Tail fiber receptor-binding protein	CATH (4.3.0)
E	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)
D	2.10.10.30	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)		CATH (4.3.0)
D	2.80.20.10	Mainly Beta	Trefoil	Tail fiber receptor-binding protein	Tail fiber receptor-binding protein	CATH (4.3.0)
D	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)
C	2.10.10.30	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)		CATH (4.3.0)
C	2.80.20.10	Mainly Beta	Trefoil	Tail fiber receptor-binding protein	Tail fiber receptor-binding protein	CATH (4.3.0)
C	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)
B	2.10.10.30	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)		CATH (4.3.0)
B	2.80.20.10	Mainly Beta	Trefoil	Tail fiber receptor-binding protein	Tail fiber receptor-binding protein	CATH (4.3.0)
B	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)
A	2.10.10.30	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)		CATH (4.3.0)
A	2.80.20.10	Mainly Beta	Trefoil	Tail fiber receptor-binding protein	Tail fiber receptor-binding protein	CATH (4.3.0)
A	3.90.1580.10	Alpha Beta	Alpha-Beta Complex	paralog of FGE (formylglycine-generating enzyme)	paralog of FGE (formylglycine-generating enzyme)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF21916	Mtd second domain (mtd_2nd)	Mtd second domain	This entry represents the second domain of Mtd. The major tropism determinant (Mtd, 40 kDa), the receptor-binding protein of Bordetella bacteriophage, varies greatly in sequence. Variation in Mtd depends on a phage-encoded retroelement that belongs t ...	This entry represents the second domain of Mtd. The major tropism determinant (Mtd, 40 kDa), the receptor-binding protein of Bordetella bacteriophage, varies greatly in sequence. Variation in Mtd depends on a phage-encoded retroelement that belongs to a family of retroelements implicated in generating sequence diversity in various phage and bacterial genomes. The second domain forms a beta sandwich structure.	Domain
A, B, C, D, E A, B, C, D, E, F	PF18454	Major tropism determinant N-terminal domain (Mtd_N)	Major tropism determinant N-terminal domain	This is the N-terminal domain of major tropism determinant (Mtd), a retroelement-encoded receptor-binding protein. Mtd-N forms a three-fold symmetric beta-prism. This resembles the pseudo three-fold-symmetric beta-prisms of monocot lectins, but lacks ...	This is the N-terminal domain of major tropism determinant (Mtd), a retroelement-encoded receptor-binding protein. Mtd-N forms a three-fold symmetric beta-prism. This resembles the pseudo three-fold-symmetric beta-prisms of monocot lectins, but lacks residues in these lectins identified as binding carbohydrates. The beta-prism and beta-sandwich domains reinforce overall trimeric assembly and therefore may have indirect roles in stabilizing the backbone of the variable region [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G, H	Pertactin Extracellular Domain	-	cell adhesion cellular process	cellular anatomical structure extracellular region cell surface periplasmic space cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane
A, B, C, D, E A, B, C, D, E, F	Major Tropism Determinant P1	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction viral tropism switching symbiont entry into host cell symbiont entry into host	virus tail, fiber virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G, H	IPR004899	Pertactin, central region	Domain
G, H	IPR036709	Autotransporter beta-domain superfamily	Homologous Superfamily
G, H	IPR051551	Bacterial autotransporter adhesion	Family
G, H	IPR005546	Autotransporter beta-domain	Domain
G, H	IPR006315	Outer membrane autotransporter barrel domain	Domain
G, H	IPR012332	Autotransporter, pectate lyase C-like domain superfamily	Homologous Superfamily
G, H	IPR003992	Pertactin autotransporter	Family
G, H	IPR003991	Pertactin virulence factor family	Family
G, H	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR042095	Sulfatase-modifying factor enzyme superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR041352	Major tropism determinant, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR054114	Major tropism determinant, second domain	Domain