2IM9 | pdb_00002im9

Crystal structure of protein LPG0564 from Legionella pneumophila str. Philadelphia 1, Pfam DUF1460

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2im9a1	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	Lpg0564-like	Hypothetical protein Lpg0564	(Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ) [TaxId: 272624 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Lpg0564-like	8030412	4003350	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cysteine proteinases	8042791	3001808	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF1460	e2im9A1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: DUF1460	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.3670.10	Mainly Alpha	Orthogonal Bundle	Putative xylanase fold	Putative xylanase like domain	CATH (4.3.0)
A	2.30.260.10	Mainly Beta	Roll	putative xylanase like fold	putative xylanase like domain	CATH (4.3.0)
A	1.10.287.520	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07313	N-acetylmuramoyl-L-alanine amidase-like (AmiA-like)	N-acetylmuramoyl-L-alanine amidase-like	This family includes N-acetylmuramoyl-L-alanine amidase (AMA) from Bacteroides uniformis and similar bacterial proteins. AmiA hydrolyses GlcNAc-1,6-anhydro-MurNAc-peptide into disaccharide and stem peptide. It shows an alpha/beta/alpha three-layered ...	This family includes N-acetylmuramoyl-L-alanine amidase (AMA) from Bacteroides uniformis and similar bacterial proteins. AmiA hydrolyses GlcNAc-1,6-anhydro-MurNAc-peptide into disaccharide and stem peptide. It shows an alpha/beta/alpha three-layered sandwich fold with a catalytic core that consists of a central five-stranded beta-sheet and four alpha-helices. It is structurally related to NlpC/P60 gamma- D-Glu-meso-diaminopimelic acid amidases [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR010846	N-acetylmuramoyl-L-alanine amidase-like	Family
A	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.