2HJD
Crystal structure of a second quorum sensing antiactivator TraM2 from A. tumefaciens strain A6
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | d2hjdd_ | All alpha proteins | Long alpha-hairpin | Transcriptional repressor TraM | Transcriptional repressor TraM | automated matches | (Agrobacterium tumefaciens ) [TaxId: 358 ], | SCOPe (2.08) |
A | d2hjda_ | All alpha proteins | Long alpha-hairpin | Transcriptional repressor TraM | Transcriptional repressor TraM | automated matches | (Agrobacterium tumefaciens ) [TaxId: 358 ], | SCOPe (2.08) |
B | d2hjdb_ | All alpha proteins | Long alpha-hairpin | Transcriptional repressor TraM | Transcriptional repressor TraM | automated matches | (Agrobacterium tumefaciens ) [TaxId: 358 ], | SCOPe (2.08) |
C | d2hjdc_ | All alpha proteins | Long alpha-hairpin | Transcriptional repressor TraM | Transcriptional repressor TraM | automated matches | (Agrobacterium tumefaciens ) [TaxId: 358 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2 Family | Transcriptional repressor TraM | 8085819 | 4002233 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Tram-like | 8085820 | 3000130 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Tram-like | 8085820 | 3000130 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Tram-like | 8085820 | 3000130 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Tram-like | 8085820 | 3000130 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | PF09228 | e2hjdD1 | A: alpha bundles | X: Long alpha-hairpin | H: Transcriptional repressor TraM (From Topology) | T: Transcriptional repressor TraM | F: PF09228 | ECOD (1.6) |
A | PF09228 | e2hjdA1 | A: alpha bundles | X: Long alpha-hairpin | H: Transcriptional repressor TraM (From Topology) | T: Transcriptional repressor TraM | F: PF09228 | ECOD (1.6) |
B | PF09228 | e2hjdB1 | A: alpha bundles | X: Long alpha-hairpin | H: Transcriptional repressor TraM (From Topology) | T: Transcriptional repressor TraM | F: PF09228 | ECOD (1.6) |
C | PF09228 | e2hjdC1 | A: alpha bundles | X: Long alpha-hairpin | H: Transcriptional repressor TraM (From Topology) | T: Transcriptional repressor TraM | F: PF09228 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 1.10.287.160 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | HR1 repeat | CATH (4.3.0) |
A | 1.10.287.160 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | HR1 repeat | CATH (4.3.0) |
B | 1.10.287.160 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | HR1 repeat | CATH (4.3.0) |
C | 1.10.287.160 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | HR1 repeat | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09228 | Prokaryotic Transcriptional repressor TraM (Prok-TraM) | Prokaryotic Transcriptional repressor TraM | Members of this family of transcriptional repressors adopt a T-shaped structure, with a core composed of two antiparallel alpha-helices. These proteins can be divided into two parts, a 'globular head' and an 'elongated tail', and they negatively regu ... | Domain |