2H6L | pdb_00002h6l

X-Ray Crystal Structure of the Metal-containing Protein AF0104 from Archaeoglobus fulgidus. Northeast Structural Genomics Consortium Target GR103.

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd2h6lc2 Alpha and beta proteins (a+b) AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like AF0104-like automated matches (Archaeoglobus fulgidus ) [TaxId: 2234 ], SCOPe (2.08)
Cd2h6lc3 Artifacts Tags Tags Tags C-terminal Tags (Archaeoglobus fulgidus ) [TaxId: 2234 ], SCOPe (2.08)
Bd2h6lb2 Alpha and beta proteins (a+b) AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like AF0104-like automated matches (Archaeoglobus fulgidus ) [TaxId: 2234 ], SCOPe (2.08)
Bd2h6lb3 Artifacts Tags Tags Tags C-terminal Tags (Archaeoglobus fulgidus ) [TaxId: 2234 ], SCOPe (2.08)
Ad2h6la1 Alpha and beta proteins (a+b) AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like AF0104-like Hypothetical protein AF0104 (Archaeoglobus fulgidus ) [TaxId: 2234 ], SCOPe (2.08)
Ad2h6la2 Artifacts Tags Tags Tags C-terminal Tags (Archaeoglobus fulgidus ) [TaxId: 2234 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyAF0104/ALDC/Ptd012-like 8042177 3001273 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAF0104/ALDC/Ptd012-like 8042177 3001273 SCOP2B (2022-06-29)
ASCOP2 FamilyAF0104-like 8029798 4003446 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyAF0104/ALDC/Ptd012-like 8042177 3001273 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ce2h6lC1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: DUF3197F:ECOD (20:10:01)
Be2h6lB1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: DUF3197F:ECOD (20:10:01)
Ae2h6lA1 A: AF0104/ALDC/Ptd012-likeX: AF0104/ALDC/Ptd012-likeH: AF0104/ALDC/Ptd012-likeT: PCCF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C3.30.1330.80 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
B3.30.1330.80 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
A3.30.1330.80 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF03479Plants and Prokaryotes Conserved (PCC) domain (PCC)Plants and Prokaryotes Conserved (PCC) domainThis is a Plants and Prokaryotes Conserved (PPC) domain found in proteins that contain AT-hook motifs Pfam:PF02178 which strongly suggests a DNA-binding function for the proteins as a whole. Proteins with PPC domains are found in Bacteria, Archaea an ...This is a Plants and Prokaryotes Conserved (PPC) domain found in proteins that contain AT-hook motifs Pfam:PF02178 which strongly suggests a DNA-binding function for the proteins as a whole. Proteins with PPC domains are found in Bacteria, Archaea and the plant kingdom [1, 2].The PPC domain has a single alpha-helix packed against an antiparallel beta-sheet, which is formed by five beta-strands. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Swiss:Q46QL5 which appear to form a zinc-binding site, and the domain has been observed to form homotrimers. The domain co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Hypothetical protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR005175PPC domainDomain
A, B, C
IPR025707Predicted DNA-binding protein with PD1-like DNA-binding motifFamily