2FT3 | pdb_00002ft3

Crystal structure of the biglycan dimer core protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Hepar_II_III	e2ft3F1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (develop294)
E	Hepar_II_III	e2ft3E1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (develop294)
D	Hepar_II_III	e2ft3D1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (develop294)
C	Hepar_II_III	e2ft3C1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (develop294)
B	Hepar_II_III	e2ft3B1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (develop294)
A	tRNA-synt_1b	e2ft3A1	A: alpha bundles	X: Globin-like	H: Globin-like	T: Globin-like	F: tRNA-synt_1b	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
E	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
D	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
C	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
B	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
A	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF13855	Leucine rich repeat (LRR_8)	Leucine rich repeat	-	Repeat
A, B, C, D, E A, B, C, D, E, F	PF01462	Leucine rich repeat N-terminal domain (LRRNT)	Leucine rich repeat N-terminal domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Biglycan	protein binding binding cytokine binding extracellular matrix binding glycosaminoglycan binding carbohydrate derivative binding	developmental process multicellular organism development multicellular organismal process skeletal system development anatomical structure development animal organ development bone development system development connective tissue development tissue development articular cartilage development cartilage development	cellular anatomical structure extracellular region cell surface cell periphery sarcolemma plasma membrane membrane membrane-bounded organelle intracellular anatomical structure transport vesicle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure extracellular region cell surface cell periphery sarcolemma plasma membrane membrane membrane-bounded organelle intracellular anatomical structure transport vesicle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle extracellular matrix external encapsulating structure extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR016352	Small leucine-rich proteoglycan, class I, decorin/asporin/byglycan	Family
A, B, C, D, E A, B, C, D, E, F	IPR000372	Leucine-rich repeat N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001611	Leucine-rich repeat	Repeat
A, B, C, D, E A, B, C, D, E, F	IPR050333	Small Leucine-Rich Proteoglycans	Family
A, B, C, D, E A, B, C, D, E, F	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, B, C, D, E A, B, C, D, E, F	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.