2FQM | pdb_00002fqm

Crystal structure of the oligomerization domain of the phosphoprotein of vesicular stomatitis virus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2fqmf_	Alpha and beta proteins (a+b)	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein P (M1)	(Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
E	d2fqme2	Alpha and beta proteins (a+b)	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein P (M1)	(Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
E	d2fqme3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
D	d2fqmd2	Alpha and beta proteins (a+b)	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein P (M1)	(Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
D	d2fqmd3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
C	d2fqmc_	Alpha and beta proteins (a+b)	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein P (M1)	(Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
B	d2fqmb_	Alpha and beta proteins (a+b)	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein P (M1)	(Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)
A	d2fqma1	Alpha and beta proteins (a+b)	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein oligomerization domain-like	Phosphoprotein P (M1)	(Vesicular stomatitis Indiana virus ) [TaxId: 11277 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Phosphoprotein oligomerization domain-like	8034002	3001481	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phosphoprotein oligomerization domain-like	8034002	3001481	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phosphoprotein oligomerization domain-like	8034002	3001481	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phosphoprotein oligomerization domain-like	8034002	3001481	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phosphoprotein oligomerization domain-like	8034002	3001481	SCOP2B (2022-06-29)
A	SCOP2 Family	Phosphoprotein oligomerization domain-like	8021622	4002608	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Phosphoprotein oligomerization domain-like	8034002	3001481	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	CBAH	e2fqmF1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
E	CBAH	e2fqmE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
D	CBAH	e2fqmD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
C	CBAH	e2fqmC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: CBAH	ECOD (v294.1)
B	Phosphoprotein	e2fqmB1	A: few secondary structure elements	X: Phosphoprotein oligomerization domain-like	H: Phosphoprotein oligomerization domain-like	T: Phosphoprotein oligomerization domain-like	F: Phosphoprotein	ECOD (v294.1)
A	Phosphoprotein	e2fqmA1	A: few secondary structure elements	X: Phosphoprotein oligomerization domain-like	H: Phosphoprotein oligomerization domain-like	T: Phosphoprotein oligomerization domain-like	F: Phosphoprotein	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	6.10.140.830	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
E	6.10.140.830	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
D	6.10.140.830	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
C	6.10.140.830	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
B	6.10.140.830	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
A	6.10.140.830	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Phosphoprotein	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	-	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR037263	Phosphoprotein, central domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR043036	Phosphoprotein, C-terminal domain, viral	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR048220	Phosphoprotein, C-terminal domain, vesiculovirus	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.