2FIY | pdb_00002fiy

The crystal structure of the FdhE protein from Pseudomonas aeruginosa

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2fiyb_	Multi-domain proteins (alpha and beta)	FdhE-like	FdhE-like	FdhE-like	FdhE homolog PA4809	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d2fiya1	Multi-domain proteins (alpha and beta)	FdhE-like	FdhE-like	FdhE-like	FdhE homolog PA4809	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Zinc beta-ribbon	8040976	3001238	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Zinc beta-ribbon	8054260	3001238	SCOP2B (2022-06-29)
A	SCOP2 Family	FdhE-like	8028597	4000428	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Zinc beta-ribbon	8054260	3001238	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Zinc beta-ribbon	8040976	3001238	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Hepar_II_III	e2fiyB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (v294.1)
A	FdhE_central	e2fiyA1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: FdhE_central	ECOD (v294.1)
A	FdhE_C	e2fiyA2	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: FdhE_C	ECOD (v294.1)
A	RVP	e2fiyA3	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: LigT-related	T: LigT-related	F: RVP	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.90.1670.10	Alpha Beta	Alpha-Beta Complex	FdhE-like fold	FdhE-like domain	CATH (4.3.0)
A	3.90.1670.10	Alpha Beta	Alpha-Beta Complex	FdhE-like fold	FdhE-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF24860	FdhE, C-terminal domain (FdhE_C)	FdhE, C-terminal domain	This is the C-terminal domain of FdhE from Escherichia coli and similar proteins necessary for formate dehydrogenase activity. This domain is found associated with Pfam:PF04216 and Pfam:PF24859.	Domain
A, B	PF24859	FdhE, central domain (FdhE_central)	FdhE, central domain	This is the central domain of FdhE from Escherichia coli and similar proteins necessary for formate dehydrogenase activity. This domain is found associated with Pfam:PF04216.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Protein fdhE homolog	cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR056797	FdhE, central domain	Domain
A, B	IPR024064	FdhE-like superfamily	Homologous Superfamily
A, B	IPR056774	FdhE, N-terminal domain	Domain
A, B	IPR006452	Formate dehydrogenase accessory protein	Family
A, B	IPR056796	FdhE, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.