2EQ8
Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdp
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2 Family | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 8076214 | 4000730 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 8076215 | 3001183 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 8076215 | 3001183 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02852 | e2eq8A4 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain (From Topology) | T: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | F: PF02852 | ECOD (1.6) |
A | PF07992 | e2eq8A5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
B | PF02852 | e2eq8B4 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain (From Topology) | T: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | F: PF02852 | ECOD (1.6) |
B | PF07992 | e2eq8B5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
D | PF02852 | e2eq8D4 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain (From Topology) | T: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | F: PF02852 | ECOD (1.6) |
D | PF07992 | e2eq8D5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
E | PF02852 | e2eq8E4 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain (From Topology) | T: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | F: PF02852 | ECOD (1.6) |
E | PF07992 | e2eq8E5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
C | PF02817 | e2eq8C1 | A: alpha arrays | X: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex (From Topology) | H: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex (From Topology) | T: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | F: PF02817 | ECOD (1.6) |
F | PF02817 | e2eq8F1 | A: alpha arrays | X: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex (From Topology) | H: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex (From Topology) | T: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | F: PF02817 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
A | 3.30.390.30 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
B | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
B | 3.30.390.30 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
D | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
D | 3.30.390.30 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
E | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (4.3.0) |
E | 3.30.390.30 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07992 | Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2) | Pyridine nucleotide-disulphide oxidoreductase | This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. | Domain | |
PF02852 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain (Pyr_redox_dim) | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. | Domain | |
PF02817 | e3 binding domain (E3_binding) | e3 binding domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004099 | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | Domain | |
IPR006258 | Dihydrolipoamide dehydrogenase | Family | |
IPR001100 | Pyridine nucleotide-disulphide oxidoreductase, class I | Family | |
IPR023753 | FAD/NAD(P)-binding domain | Domain | |
IPR016156 | FAD/NAD-linked reductase, dimerisation domain superfamily | Homologous Superfamily | |
IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR012999 | Pyridine nucleotide-disulphide oxidoreductase, class I, active site | Active Site | |
IPR001078 | 2-oxoacid dehydrogenase acyltransferase, catalytic domain | Domain | |
IPR023213 | Chloramphenicol acetyltransferase-like domain superfamily | Homologous Superfamily | |
IPR036625 | E3-binding domain superfamily | Homologous Superfamily | |
IPR004167 | Peripheral subunit-binding domain | Domain | |
IPR011053 | Single hybrid motif | Homologous Superfamily | |
IPR003016 | 2-oxo acid dehydrogenase, lipoyl-binding site | Binding Site | |
IPR000089 | Biotin/lipoyl attachment | Domain |