2BE7 | pdb_00002be7

Crystal structure of the unliganded (T-state) aspartate transcarbamoylase of the psychrophilic bacterium Moritella profunda

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2be7d1	Alpha and beta proteins (a+b)	Ferredoxin-like	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain	Aspartate carbamoyltransferase	(Moritella profunda ) [TaxId: 111291 ],	SCOPe (2.08)
D	d2be7d2	Small proteins	Rubredoxin-like	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	(Moritella profunda ) [TaxId: 111291 ],	SCOPe (2.08)
F	d2be7f1	Alpha and beta proteins (a+b)	Ferredoxin-like	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain	Aspartate carbamoyltransferase	(Moritella profunda ) [TaxId: 111291 ],	SCOPe (2.08)
F	d2be7f2	Small proteins	Rubredoxin-like	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	(Moritella profunda ) [TaxId: 111291 ],	SCOPe (2.08)
E	d2be7e1	Alpha and beta proteins (a+b)	Ferredoxin-like	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain	Aspartate carbamoyltransferase	(Moritella profunda ) [TaxId: 111291 ],	SCOPe (2.08)
E	d2be7e2	Small proteins	Rubredoxin-like	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain	(Moritella profunda ) [TaxId: 111291 ],	SCOPe (2.08)
A	d2be7a1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Aspartate carbamoyltransferase catalytic subunit	(Moritella profunda ) [TaxId: 111291 ],	SCOPe (2.08)
B	d2be7b1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Aspartate carbamoyltransferase catalytic subunit	(Moritella profunda ) [TaxId: 111291 ],	SCOPe (2.08)
C	d2be7c1	Alpha and beta proteins (a/b)	ATC-like	Aspartate/ornithine carbamoyltransferase	Aspartate/ornithine carbamoyltransferase	Aspartate carbamoyltransferase catalytic subunit	(Moritella profunda ) [TaxId: 111291 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PYRIN	e2be7D1	A: a/b three-layered sandwiches	X: Globin-like	H: Globin-like	T: Globin-like	F: PYRIN	ECOD (v294.1)
F	Pyr_redox_dim	e2be7F3	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pyr_redox_dim	ECOD (v294.1)
E	MarR	e2be7E1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MarR	ECOD (v294.1)
A	PYRIN	e2be7A1	A: a/b three-layered sandwiches	X: Globin-like	H: Globin-like	T: Globin-like	F: PYRIN	ECOD (v294.1)
B	MarR	e2be7B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MarR	ECOD (v294.1)
C	MarR	e2be7C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: winged helix domain	F: MarR	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.70.140	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Aspartate carbamoyltransferase regulatory subunit, N-terminal domain	CATH (4.3.0)
D	2.30.30.20	Mainly Beta	Roll	SH3 type barrels.	Aspartate carbamoyltransferase regulatory subunit, C-terminal domain	CATH (4.3.0)
F	3.30.70.140	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Aspartate carbamoyltransferase regulatory subunit, N-terminal domain	CATH (4.3.0)
F	2.30.30.20	Mainly Beta	Roll	SH3 type barrels.	Aspartate carbamoyltransferase regulatory subunit, C-terminal domain	CATH (4.3.0)
E	3.30.70.140	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Aspartate carbamoyltransferase regulatory subunit, N-terminal domain	CATH (4.3.0)
E	2.30.30.20	Mainly Beta	Roll	SH3 type barrels.	Aspartate carbamoyltransferase regulatory subunit, C-terminal domain	CATH (4.3.0)
A	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)
B	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)
C	3.40.50.1370	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Aspartate/ornithine carbamoyltransferase	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, E, F	Aspartate Carbamoyltransferase Regulatory Chain	cation binding ion binding binding metal ion binding small molecule binding	pyrimidine-containing compound metabolic process nucleobase biosynthetic process pyrimidine nucleobase biosynthetic process primary metabolic process nucleobase-containing compound metabolic process pyrimidine nucleobase metabolic process biosynthetic process nucleobase-containing small molecule metabolic process nucleobase metabolic process 'de novo' pyrimidine nucleobase biosynthetic process small molecule metabolic process metabolic process cellular process pyrimidine-containing compound biosynthetic process pyrimidine-containing compound metabolic process nucleobase biosynthetic process pyrimidine nucleobase biosynthetic process primary metabolic process nucleobase-containing compound metabolic process pyrimidine nucleobase metabolic process biosynthetic process nucleobase-containing small molecule metabolic process nucleobase metabolic process 'de novo' pyrimidine nucleobase biosynthetic process small molecule metabolic process metabolic process cellular process pyrimidine-containing compound biosynthetic process nucleoside phosphate metabolic process nucleotide biosynthetic process nucleobase-containing compound biosynthetic process nucleotide metabolic process pyrimidine nucleotide metabolic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process phosphorus metabolic process pyrimidine nucleotide biosynthetic process	protein-containing complex catalytic complex aspartate carbamoyltransferase complex transferase complex
A, B, C	Aspartate Carbamoyltransferase Catalytic Chain	aspartate carbamoyltransferase activity carboxyl- or carbamoyltransferase activity transferase activity, transferring one-carbon groups transferase activity catalytic activity binding amino acid binding	pyrimidine-containing compound metabolic process nucleobase biosynthetic process pyrimidine nucleobase biosynthetic process primary metabolic process nucleobase-containing compound metabolic process pyrimidine nucleobase metabolic process biosynthetic process nucleobase-containing small molecule metabolic process nucleobase metabolic process 'de novo' pyrimidine nucleobase biosynthetic process small molecule metabolic process metabolic process cellular process pyrimidine-containing compound biosynthetic process pyrimidine-containing compound metabolic process nucleobase biosynthetic process pyrimidine nucleobase biosynthetic process primary metabolic process nucleobase-containing compound metabolic process pyrimidine nucleobase metabolic process biosynthetic process nucleobase-containing small molecule metabolic process nucleobase metabolic process 'de novo' pyrimidine nucleobase biosynthetic process small molecule metabolic process metabolic process cellular process pyrimidine-containing compound biosynthetic process ribose phosphate metabolic process nucleotide biosynthetic process carbohydrate derivative metabolic process pyrimidine nucleotide metabolic process 'de novo' UMP biosynthetic process ribonucleotide biosynthetic process UMP biosynthetic process ribonucleotide metabolic process phosphate-containing compound metabolic process UMP metabolic process phosphorus metabolic process nucleoside monophosphate metabolic process ribose phosphate biosynthetic process pyrimidine ribonucleotide metabolic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process pyrimidine nucleoside monophosphate metabolic process pyrimidine ribonucleoside monophosphate metabolic process nucleobase-containing compound biosynthetic process nucleotide metabolic process nucleoside monophosphate biosynthetic process pyrimidine ribonucleoside monophosphate biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process pyrimidine nucleoside monophosphate biosynthetic process ribonucleoside monophosphate biosynthetic process pyrimidine nucleotide biosynthetic process pyrimidine ribonucleotide biosynthetic process amino acid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, E, F	IPR036792	Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily	Homologous Superfamily
D, E, F	IPR036793	Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily	Homologous Superfamily
D, E, F	IPR020542	Aspartate carbamoyltransferase regulatory subunit, C-terminal	Domain
D, E, F	IPR020545	Aspartate carbamoyltransferase regulatory subunit, N-terminal	Domain
D, E, F	IPR002801	Aspartate transcarbamylase regulatory subunit	Family
A, B, C	IPR006132	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Domain
A, B, C	IPR006131	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Domain
A, B, C	IPR036901	Aspartate/ornithine carbamoyltransferase superfamily	Homologous Superfamily
A, B, C	IPR006130	Aspartate/ornithine carbamoyltransferase	Family
A, B, C	IPR002082	Aspartate carbamoyltransferase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.