Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyThi4/GidA-like 8092223 3000051 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHelix-hairpin-helix tandem 8092227 3000163 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyThi4/GidA-like 8092223 3000051 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHelix-hairpin-helix tandem 8092227 3000163 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGIDA_assoc_2nde2zxhA4 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: GIDA_assoc_2ndECOD (1.6)
AGIDA_assoc_1ste2zxhA7 A: alpha arraysX: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology)H: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology)T: C-terminal helical domain in tRNA modifying enzyme GidAF: GIDA_assoc_1stECOD (1.6)
AGIDAe2zxhA6 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-C (From Topology)T: FAD-linked reductases-CF: GIDAECOD (1.6)
AFAD_binding_3_1ste2zxhA5 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: FAD_binding_3_1stECOD (1.6)
BGIDA_assoc_2nde2zxhB4 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: GIDA_assoc_2ndECOD (1.6)
BGIDA_assoc_1ste2zxhB7 A: alpha arraysX: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology)H: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology)T: C-terminal helical domain in tRNA modifying enzyme GidAF: GIDA_assoc_1stECOD (1.6)
BGIDAe2zxhB6 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-C (From Topology)T: FAD-linked reductases-CF: GIDAECOD (1.6)
BFAD_binding_3_1ste2zxhB5 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: FAD_binding_3_1stECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF13932tRNA modifying enzyme MnmG/GidA C-terminal helical bundle (GIDA_C)tRNA modifying enzyme MnmG/GidA C-terminal helical bundleThe GidA associated domain is a domain that has been identified at the C-terminus of protein GidA. It consists of several helices, last three being rather short and forming small bundle and are represented in this entry. GidA is a tRNA modification e ...The GidA associated domain is a domain that has been identified at the C-terminus of protein GidA. It consists of several helices, last three being rather short and forming small bundle and are represented in this entry. GidA is a tRNA modification enzyme found in bacteria and mitochondrial. Based on mutational analysis the C-terminal helices have been suggested to be implicated in binding of the D-stem of tRNA [2] and, specifically this domain, to be responsible for the interaction with protein MnmE [1]. Structures of GidA in complex with either tRNA or MnmE are missing. Reported to bind to Pfam family MnmE, Pfam:PF12631.
Domain
A, B
PF21680tRNA modifying enzyme MnmG/GidA C-terminal helical domain (GIDA_C_1st)tRNA modifying enzyme MnmG/GidA C-terminal helical domainThe GidA associated domain is a domain that has been identified at the C-terminus of protein GidA. It consists of several helices, the last three being rather short and forming small bundle. GidA is an tRNA modification enzyme found in bacteria and m ...The GidA associated domain is a domain that has been identified at the C-terminus of protein GidA. It consists of several helices, the last three being rather short and forming small bundle. GidA is an tRNA modification enzyme found in bacteria and mitochondrial. Based on mutational analysis this domain has been suggested to be implicated in binding of the D-stem of tRNA [2] and, in particular the small bundle, to be responsible for the interaction with protein MnmE [1]. Structures of GidA in complex with either tRNA or MnmE are missing. Reported to bind to Pfam family MnmE, Pfam:PF12631. This entry represents the first helices of the GidA associated domain. The last three helices are covered in Pfam:PF13932.
Domain
A, B
PF01134Glucose inhibited division protein A (GIDA)Glucose inhibited division protein A- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage