2ZUY | pdb_00002zuy

Crystal structure of exotype rhamnogalacturonan lyase YesX


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APDH_E1_Me2zuyA1 A: a/b three-layered sandwichesX: Thioredoxin-likeH: Thioredoxin-likeT: Thioredoxin-likeF: PDH_E1_MECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01839FG-GAP repeat (FG-GAP)FG-GAP repeat- Repeat
PF18370Rhamnogalacturonan I lyases beta-sheet domain (RGI_lyase)Rhamnogalacturonan I lyases beta-sheet domainThis is the beta-sheet domain found in rhamnogalacturonan (RG) lyases [1], which are responsible for an initial cleavage of the RG type I (RG-I) region of plant cell wall pectin. Polysaccharide lyase family 11 carrying this domain, such as YesW (EC:4 ...This is the beta-sheet domain found in rhamnogalacturonan (RG) lyases [1], which are responsible for an initial cleavage of the RG type I (RG-I) region of plant cell wall pectin. Polysaccharide lyase family 11 carrying this domain, such as YesW (EC:4.2.2.23) and YesX (EC:4.2.2.24), cleave glycoside bonds between rhamnose and galacturonic acid residues in RG-I through a beta-elimination reaction [2]. Other family members carrying this domain are hemagglutinin A, lysine gingipain (Kgp) [3] and Chitinase C (EC:3.2.1.14).
Domain