2ZBC | pdb_00002zbc

Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
He2zbcH1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: LonginF:ECOD (20:10:01)
Ge2zbcG1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: LonginF:ECOD (20:10:01)
Fe2zbcF1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: LonginF:ECOD (20:10:01)
Ee2zbcE1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: LonginF:ECOD (20:10:01)
De2zbcD1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: LonginF:ECOD (20:10:01)
Ce2zbcC1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: LonginF:ECOD (20:10:01)
Be2zbcB1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: LonginF:ECOD (20:10:01)
Ae2zbcA1 A: Long alpha-hairpinX: C-terminal UvrC-binding domain of UvrBH: C-terminal UvrC-binding domain of UvrBT: LonginF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H3.30.70.920 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domainCATH (4.3.0)
G3.30.70.920 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domainCATH (4.3.0)
F3.30.70.920 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domainCATH (4.3.0)
E3.30.70.920 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domainCATH (4.3.0)
D3.30.70.920 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domainCATH (4.3.0)
C3.30.70.920 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domainCATH (4.3.0)
B3.30.70.920 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domainCATH (4.3.0)
A3.30.70.920 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01037Lrp/AsnC ligand binding domain (AsnC_trans_reg)Lrp/AsnC ligand binding domainThe l-leucine-responsive regulatory protein (Lrp/AsnC) family is a family of similar bacterial transcription regulatory proteins. The family is named after two E. coli proteins involved in regulating amino acid metabolism. This entry corresponds to t ...The l-leucine-responsive regulatory protein (Lrp/AsnC) family is a family of similar bacterial transcription regulatory proteins. The family is named after two E. coli proteins involved in regulating amino acid metabolism. This entry corresponds to the usually C-terminal regulatory ligand binding domain. Structurally this domain has a dimeric alpha/beta barrel fold [2]. This domain binds almost exclusively amino acids but also 4-hydroxyphenylpyruvate and kynurenine (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR050684Transcriptional regulator Lrp/AsnC/Siroheme decarboxylaseFamily
A, B, C, D, E
IPR019887Transcription regulator AsnC/Lrp, ligand binding domainDomain
A, B, C, D, E
IPR011008Dimeric alpha-beta barrelHomologous Superfamily