2YY3 | pdb_00002yy3

Crystal Structure of translation elongation factor EF-1 beta from Pyrococcus horikoshii

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	eEF-1beta-like	8063608	3001297	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	eEF-1beta-like	8063608	3001297	SCOP2B (2022-06-29)
A	SCOP2 Family	eEF-1beta-like	8063607	4001327	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	eEF-1beta-like	8063608	3001297	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Rpf1_C	e2yy3B1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Rpf1_C	ECOD (v294.1)
C	Rpf1_C	e2yy3C1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Rpf1_C	ECOD (v294.1)
A	Rpf1_C	e2yy3A1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: Rpf1_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.70.60	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Ribosomal protein S6/Translation elongation factor EF1B	CATH (4.3.0)
C	3.30.70.60	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Ribosomal protein S6/Translation elongation factor EF1B	CATH (4.3.0)
A	3.30.70.60	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Ribosomal protein S6/Translation elongation factor EF1B	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Elongation factor 1-beta	translation factor activity translation elongation factor activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR004542	Translation elongation factor EF1B, beta chain, archaeal	Family
A, B, C	IPR036219	Translation elongation factor eEF-1beta-like superfamily	Homologous Superfamily
A, B, C	IPR014038	Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain	Domain
A, B, C	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.