2YX8 | pdb_00002yx8

Crystal structure of the extracellular domain of human RAMP1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RAMP1-like	8054000	3002261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2yx8A1	A: gp11/gp12 receptor-binding domain	X: gp11/gp12 receptor-binding domain	H: gp11/gp12 receptor-binding domain	T: Gp10_C	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.150.510	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF04901	Receptor activity modifying family (RAMP)	Receptor activity modifying family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Receptor activity-modifying protein 1	calcitonin family binding calcitonin gene-related peptide binding binding peptide hormone binding hormone binding molecular transducer activity coreceptor activity signaling receptor activity calcitonin family receptor activity peptide receptor activity G protein-coupled receptor activity G protein-coupled peptide receptor activity transmembrane signaling receptor activity calcitonin gene-related peptide receptor activity calcitonin family binding calcitonin gene-related peptide binding binding peptide hormone binding hormone binding molecular transducer activity coreceptor activity signaling receptor activity calcitonin family receptor activity peptide receptor activity G protein-coupled receptor activity G protein-coupled peptide receptor activity transmembrane signaling receptor activity calcitonin gene-related peptide receptor activity amylin receptor activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway cellular process signal transduction cellular localization establishment of protein localization cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway cellular process signal transduction cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport regulation of signaling regulation of signal transduction regulation of response to stimulus regulation of cell communication regulation of G protein-coupled receptor signaling pathway import into cell receptor internalization receptor-mediated endocytosis endocytosis vesicle-mediated transport developmental process multicellular organismal process blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development blood vessel development system development calcitonin family receptor signaling pathway calcitonin gene-related peptide receptor signaling pathway amylin receptor signaling pathway positive regulation of glycoprotein metabolic process positive regulation of protein metabolic process positive regulation of biological process carbohydrate derivative metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of glycoprotein biosynthetic process positive regulation of glycoprotein biosynthetic process carbohydrate derivative biosynthetic process regulation of biosynthetic process regulation of protein metabolic process glycoprotein biosynthetic process primary metabolic process regulation of macromolecule metabolic process glycoprotein metabolic process macromolecule biosynthetic process regulation of glycoprotein metabolic process biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process monoatomic ion transport monoatomic cation transport calcium ion transport metal ion transport protein localization to cell periphery protein localization to plasma membrane localization within membrane protein localization to membrane amylin receptor 1 signaling pathway cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to endogenous stimulus response to chemical cellular response to hormone stimulus	protein-containing complex receptor complex cell surface cellular anatomical structure cell periphery plasma membrane membrane plasma membrane protein complex membrane protein complex plasma membrane signaling receptor complex G protein-coupled receptor complex CGRP receptor complex calcitonin family receptor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR038126	RAMP domain superfamily	Homologous Superfamily
A	IPR006985	Receptor activity modifying protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: O60894	Liver Cirrhosis, Experimental migraine disorder atypical teratoid rhabdoid tumor large cell medulloblastoma malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor ulcerative colitis breast carcinoma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia interstitial cystitis lung adenocarcinoma Liver Cirrhosis, Experimental migraine disorder atypical teratoid rhabdoid tumor large cell medulloblastoma malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor ulcerative colitis breast carcinoma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia interstitial cystitis lung adenocarcinoma pancreatic intraductal papillary-mucinous carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.