2YWA | pdb_00002ywa

Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd2ywad1 All alpha proteins Four-helical up-and-down bundle Nucleotidyltransferase substrate binding subunit/domain Family 1 bi-partite nucleotidyltransferase subunit Probable nucleotidyltransferase subunit TTHA0048 (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Cd2ywac1 All alpha proteins Four-helical up-and-down bundle Nucleotidyltransferase substrate binding subunit/domain Family 1 bi-partite nucleotidyltransferase subunit Probable nucleotidyltransferase subunit TTHA0048 (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Bd2ywab1 All alpha proteins Four-helical up-and-down bundle Nucleotidyltransferase substrate binding subunit/domain Family 1 bi-partite nucleotidyltransferase subunit Probable nucleotidyltransferase subunit TTHA0048 (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)
Ad2ywaa1 All alpha proteins Four-helical up-and-down bundle Nucleotidyltransferase substrate binding subunit/domain Family 1 bi-partite nucleotidyltransferase subunit Probable nucleotidyltransferase subunit TTHA0048 (Thermus thermophilus HB8 ) [TaxId: 300852 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyHEPN domain-like 8043708 3000904 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyHEPN domain-like 8043708 3000904 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHEPN domain-like 8043708 3000904 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHEPN domain-like 8043708 3000904 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DNTase_sub_binde2ywaD1 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: NTase_sub_bindECOD (1.6)
CNTase_sub_binde2ywaC1 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: NTase_sub_bindECOD (1.6)
BNTase_sub_binde2ywaB1 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: NTase_sub_bindECOD (1.6)
ANTase_sub_binde2ywaA1 A: alpha bundlesX: Four-helical up-and-down bundleH: HEPNT: Nucleotidyltransferase substrate binding subunit/domainF: NTase_sub_bindECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D1.20.120.330 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Nucleotidyltransferases domain 2CATH (4.2.0)
C1.20.120.330 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Nucleotidyltransferases domain 2CATH (4.2.0)
B1.20.120.330 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Nucleotidyltransferases domain 2CATH (4.2.0)
A1.20.120.330 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Nucleotidyltransferases domain 2CATH (4.2.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR010235Probable ribonuclease HepTFamily