2YW0 | pdb_00002yw0

Crystal structure of hyluranidase trimer at 2.6 A resolution


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2yw0a2 All beta proteins Triple-stranded beta-helix Phage fibre proteins HylP-like Phage-associated hyaluronidase, HylP1 (Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ], SCOPe (2.08)
Ad2yw0a3 Artifacts Tags Tags Tags C-terminal Tags (Streptococcus pyogenes serotype M1 ) [TaxId: 301447 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPhage fibre proteins 8033666 3000351 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARACo_linkere2yw0A1 A: alpha bundlesX: Ribosomal protein L31e-likeH: Reductive activator for corrinoid/iron-sulfur protein second domainT: Reductive activator for corrinoid/iron-sulfur protein second domainF: RACo_linkerECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF18454Major tropism determinant N-terminal domain (Mtd_N)Major tropism determinant N-terminal domainThis is the N-terminal domain of major tropism determinant (Mtd), a retroelement-encoded receptor-binding protein. Mtd-N forms a three-fold symmetric beta-prism. This resembles the pseudo three-fold-symmetric beta-prisms of monocot lectins, but lacks ...This is the N-terminal domain of major tropism determinant (Mtd), a retroelement-encoded receptor-binding protein. Mtd-N forms a three-fold symmetric beta-prism. This resembles the pseudo three-fold-symmetric beta-prisms of monocot lectins, but lacks residues in these lectins identified as binding carbohydrates. The beta-prism and beta-sandwich domains reinforce overall trimeric assembly and therefore may have indirect roles in stabilizing the backbone of the variable region [1].
Domain
PF07212Hyaluronidase protein (HylP) (Hyaluronidase_1)Hyaluronidase protein (HylP)- Repeat

InterPro: Protein Family Classification InterPro Database Homepage