2YVJ | pdb_00002yvj

Crystal structure of the ferredoxin-ferredoxin reductase (BPHA3-BPHA4)complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2yvjb_	All beta proteins	ISP domain	ISP domain	Rieske iron-sulfur protein (ISP)	automated matches	(Pseudomonas sp. ) [TaxId: 306 ],	SCOPe (2.08)
C [auth P]	d2yvjp2	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD/NAD-linked reductases, N-terminal and central domains	NADH-dependent ferredoxin reductase, BphA4, middle domain	(Pseudomonas sp. ) [TaxId: 306 ],	SCOPe (2.08)
C [auth P]	d2yvjp1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD/NAD-linked reductases, N-terminal and central domains	NADH-dependent ferredoxin reductase, BphA4, N- and C-terminal domain	(Pseudomonas sp. ) [TaxId: 306 ],	SCOPe (2.08)
C [auth P]	d2yvjp3	Alpha and beta proteins (a+b)	CO dehydrogenase flavoprotein C-domain-like	FAD/NAD-linked reductases, dimerisation (C-terminal) domain	FAD/NAD-linked reductases, dimerisation (C-terminal) domain	NADH-dependent ferredoxin reductase, BphA4	(Pseudomonas sp. ) [TaxId: 306 ],	SCOPe (2.08)
C [auth P]	d2yvjp4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas sp. ) [TaxId: 306 ],	SCOPe (2.08)
A	d2yvja2	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD/NAD-linked reductases, N-terminal and central domains	NADH-dependent ferredoxin reductase, BphA4, middle domain	(Pseudomonas sp. ) [TaxId: 306 ],	SCOPe (2.08)
A	d2yvja1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD/NAD-linked reductases, N-terminal and central domains	NADH-dependent ferredoxin reductase, BphA4, N- and C-terminal domain	(Pseudomonas sp. ) [TaxId: 306 ],	SCOPe (2.08)
A	d2yvja3	Alpha and beta proteins (a+b)	CO dehydrogenase flavoprotein C-domain-like	FAD/NAD-linked reductases, dimerisation (C-terminal) domain	FAD/NAD-linked reductases, dimerisation (C-terminal) domain	NADH-dependent ferredoxin reductase, BphA4	(Pseudomonas sp. ) [TaxId: 306 ],	SCOPe (2.08)
A	d2yvja4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas sp. ) [TaxId: 306 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	ISP domain	8080526	3000233	SCOP2B (2022-06-29)
C [auth P]	SCOP2B Superfamily	GSR C-terminal domain-like	8056221	3000028	SCOP2B (2022-06-29)
C [auth P]	SCOP2B Superfamily	Thioredoxin reductase-like	8056220	3000050	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Thioredoxin reductase-like	8056220	3000050	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GSR C-terminal domain-like	8056221	3000028	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Rieske_3	e2yvjB1	A: beta sandwiches	X: ISP domain (From Topology)	H: ISP domain (From Topology)	T: ISP domain	F: Rieske_3	ECOD (1.6)
B	Rieske_1	e2yvjB2	A: few secondary structure elements	X: Trm112p-like (From Topology)	H: Trm112p-like (From Topology)	T: Trm112p-like	F: Rieske_1	ECOD (1.6)
C [auth P]	Reductase_C	e2yvjP1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain (From Topology)	T: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain	F: Reductase_C	ECOD (1.6)
C [auth P]	Pyr_redox_2_1	e2yvjP3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Pyr_redox_2_1	ECOD (1.6)
C [auth P]	Pyr_redox_2	e2yvjP2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Pyr_redox_2	ECOD (1.6)
A	Reductase_C	e2yvjA1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain (From Topology)	T: FAD/NAD-linked reduatases, dimerisation (C-terminal) domain	F: Reductase_C	ECOD (1.6)
A	Pyr_redox_2_1	e2yvjA3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Pyr_redox_2_1	ECOD (1.6)
A	Pyr_redox_2	e2yvjA2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Pyr_redox_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
C [auth P]	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
C [auth P]	3.30.390.30	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
A	3.30.390.30	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Biphenyl dioxygenase ferredoxin subunit	iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
A, C [auth P]	Ferredoxin reductase	oxidoreductase activity oxidoreductase activity, acting on NAD(P)H catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
B	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily
A, C [auth P]	IPR028202	Reductase, C-terminal	Domain
A, C [auth P]	IPR023753	FAD/NAD(P)-binding domain	Domain
A, C [auth P]	IPR016156	FAD/NAD-linked reductase, dimerisation domain superfamily	Homologous Superfamily
A, C [auth P]	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
A, C [auth P]	IPR050446	FAD-dependent Oxidoreductases and Apoptosis Regulators	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.