2YST | pdb_00002yst

Solution structure of the third cadherin domain from human protocadherin 7

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Cadherin	8098193	4007535	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cadherin-like	8098194	3002049	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DEP	e2ystA1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: DEP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.60	Mainly Beta	Sandwich	Immunoglobulin-like	Cadherins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protocadherin-7	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding protein binding	cell adhesion cellular process cell-cell adhesion homophilic cell-cell adhesion	membrane-bounded organelle intracellular anatomical structure platelet alpha granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure platelet alpha granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane platelet alpha granule secretory granule membrane cell periphery plasma membrane synapse cell junction glutamatergic synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR013585	Protocadherin	Domain
A	IPR050174	Protocadherin/Cadherin-related Cell Adhesion	Family
A	IPR013164	Cadherin, N-terminal	Domain
A	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A	IPR020894	Cadherin conserved site	Conserved Site
A	IPR002126	Cadherin-like	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: O60245	malignant mesothelioma non-small cell lung carcinoma ovarian cancer pilocytic astrocytoma adenoma sinusitis atypical teratoid rhabdoid tumor Crohn disease Duchenne muscular dystrophy glioblastoma large cell medulloblastoma malignant ependymoma malignant pancreatic neoplasm oligodendroglioma pancreatic ductal adenocarcinoma malignant mesothelioma non-small cell lung carcinoma ovarian cancer pilocytic astrocytoma adenoma sinusitis atypical teratoid rhabdoid tumor Crohn disease Duchenne muscular dystrophy glioblastoma large cell medulloblastoma malignant ependymoma malignant pancreatic neoplasm oligodendroglioma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor astrocytic tumor type 2 diabetes mellitus breast cancer cutaneous lupus erythematosus epilepsy head and neck cancer lung adenocarcinoma malignant glioma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psoriasis attention deficit hyperactivity disorder, inattentive type ulcerative colitis congestive heart failure cystic fibrosis epilepsy, idiopathic generalized invasive ductal breast carcinoma malignant colon neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.