2YS4 | pdb_00002ys4

Solution structure of the N-terminal PapD-like domain of HYDIN protein from human


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADUF1573e2ys4A2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: DUF1573ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF22544HYDIN/CFA65/VesB-like, Ig-like domain (HYDIN_VesB_CFA65-like_Ig)HYDIN/CFA65/VesB-like, Ig-like domainVesB is a serine protease that is secreted by the type II secretion system (T2S) in Vibrio cholerae (Swiss:Q9KSQ6). It efficiently cleaves a trypsin substrate, but not chymotrypsin and elastase substrates [1]. It has been suggested to contribute to i ...VesB is a serine protease that is secreted by the type II secretion system (T2S) in Vibrio cholerae (Swiss:Q9KSQ6). It efficiently cleaves a trypsin substrate, but not chymotrypsin and elastase substrates [1]. It has been suggested to contribute to intestinal growth or pathogenesis, although is not the only factor required for intestinal survival. VesB can cleave the A subunit of cholera toxin, a process important for cholera toxin activation [1]. It consists of a protease domain (Pfam:PF00089) followed by a Ig-like domain, represented in this entry, which may be involved in one or more different functions such as stabilizing the protease domain, co-defining substrate specificity, binding to the bacterial surface and being part of a yet undefined secretion motif of the T2S system [1]. This protein belongs to the chymotrypsin subfamily A (which includes mostly eukaryotic proteases), having a structure and specificity profile resembling that of eukaryotic trypsin-like proteases. This domain is also found in some eukaryotic proteins, such as HYDIN and CFA65 from human (which contain repeated Ig-like domains).
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Hydrocephalus-inducing protein homolog-