Annotations: 2YPW

Atomic model for the N-terminus of TraO fitted in the full-length structure of the bacterial pKM101 type IV secretion system core complex

External Resource: Annotation

Domain Annotation: ECOD Classification
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N	CagX	e2ypwN1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
M	CagX	e2ypwM1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
L	CagX	e2ypwL1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
K	CagX	e2ypwK1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
J	CagX	e2ypwJ1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
I	CagX	e2ypwI1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
H	CagX	e2ypwH1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
G	CagX	e2ypwG1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
F	CagX	e2ypwF1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
E	CagX	e2ypwE1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
D	CagX	e2ypwD1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
C	CagX	e2ypwC1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
B	CagX	e2ypwB1	A: alpha arrays	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: CagX	ECOD (v295.2)
A	CagX	e2ypwA1	A: alpha arrays	X: HTH	H: Nudix	T: Nudix	F: CagX	ECOD (v295.2)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR033645	VirB9/CagX/TrbG, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR038161	VirB9/CagX/TrbG, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR010258	Conjugal transfer TrbG/VirB9/CagX	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

2YPW | pdb_00002ypw

Atomic model for the N-terminus of TraO fitted in the full-length structure of the bacterial pKM101 type IV secretion system core complex

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage