2YJV | pdb_00002yjv

Crystal structure of E. coli regulator of ribonuclease activity A (RraA) bound to fragment of DEAD-box protein RhlB

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RraA-like	8039820	3000324	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	RraA-like	e2yjvL1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
K	RraA-like	e2yjvK1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
J	RraA-like	e2yjvJ1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
I	RraA-like	e2yjvI1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
H	RraA-like	e2yjvH1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
G	RraA-like	e2yjvG1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
F	RraA-like	e2yjvF1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
E	RraA-like	e2yjvE1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
D	RraA-like	e2yjvD1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
C	RraA-like	e2yjvC1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
B	RraA-like	e2yjvB1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)
A	RraA-like	e2yjvA1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: RraA-like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
K	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
J	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
I	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
H	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
G	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
F	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
E	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
D	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
C	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
B	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
A	3.50.30.40	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF03737	Aldolase/RraA (RraA-like)	Aldolase/RraA	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M, N	ATP-DEPENDENT RNA HELICASE RHLB	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	REGULATOR OF RIBONUCLEASE ACTIVITY A	enzyme regulator activity molecular function inhibitor activity molecular function regulator activity nuclease inhibitor activity enzyme inhibitor activity endoribonuclease inhibitor activity ribonuclease inhibitor activity protein binding binding enzyme binding identical protein binding	protein-containing complex organization protein trimerization cellular component organization cellular component biogenesis cellular component assembly protein homotrimerization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis regulation of cellular process catabolic process negative regulation of biological process protein-containing complex organization protein trimerization cellular component organization cellular component biogenesis cellular component assembly protein homotrimerization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis regulation of cellular process catabolic process negative regulation of biological process RNA metabolic process macromolecule catabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process RNA catabolic process negative regulation of macromolecule metabolic process negative regulation of catabolic process regulation of biological process negative regulation of metabolic process biological regulation negative regulation of RNA catabolic process primary metabolic process regulation of macromolecule metabolic process regulation of catabolic process nucleic acid metabolic process nucleobase-containing compound catabolic process nucleic acid catabolic process metabolic process macromolecule metabolic process regulation of metabolic process negative regulation of RNA metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR010203	Regulator of ribonuclease activity A	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR014339	Regulator of ribonuclease activity A, gammaproteobacteria	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036704	Ribonuclease E inhibitor RraA/RraA-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.