2YJK | pdb_00002yjk

Structure of Dps from MICROBACTERIUM ARBORESCENS in the high iron form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d2yjkl_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
K	d2yjkk_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
J	d2yjkj_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
I	d2yjki_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
H	d2yjkh_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
G	d2yjkg_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
F	d2yjkf_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
E	d2yjke_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
D	d2yjkd_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
C	d2yjkc_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
B	d2yjkb_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)
A	d2yjka_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Microbacterium arborescens ) [TaxId: 33883 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8075810	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Flavin_Reduct	e2yjkL1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
K	Flavin_Reduct	e2yjkK1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
J	Flavin_Reduct	e2yjkJ1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
I	Flavin_Reduct	e2yjkI1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
H	Flavin_Reduct	e2yjkH1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
G	Flavin_Reduct	e2yjkG1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
F	Flavin_Reduct	e2yjkF1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
E	Flavin_Reduct	e2yjkE1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
D	Flavin_Reduct	e2yjkD1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
C	Flavin_Reduct	e2yjkC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
B	Flavin_Reduct	e2yjkB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)
A	Flavin_Reduct	e2yjkA1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: Flavin_Reduct	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	AFP	cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002177	DNA-binding protein Dps	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008331	Ferritin/DPS domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.