2YHE | pdb_00002yhe

Structure determination of the stereoselective inverting sec- alkylsulfatase Pisa1 from Pseudomonas sp.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2yhef2	Alpha and beta proteins (a+b)	SCP-like	SCP-like	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
F	d2yhef1	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
F	d2yhef3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
E	d2yhee2	Alpha and beta proteins (a+b)	SCP-like	SCP-like	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
E	d2yhee1	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
E	d2yhee3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
D	d2yhed2	Alpha and beta proteins (a+b)	SCP-like	SCP-like	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
D	d2yhed1	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
D	d2yhed3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
C	d2yhec2	Alpha and beta proteins (a+b)	SCP-like	SCP-like	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
C	d2yhec1	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
C	d2yhec3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
B	d2yheb2	Alpha and beta proteins (a+b)	SCP-like	SCP-like	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
B	d2yheb1	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
B	d2yheb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
A	d2yhea2	Alpha and beta proteins (a+b)	SCP-like	SCP-like	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
A	d2yhea1	Alpha and beta proteins (a+b)	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	automated matches	automated matches	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)
A	d2yhea3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas sp. DSM 6611 ) [TaxId: 1007495 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	SapB_2,SapB_1	e2yheF3	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: SapB_2,SapB_1	ECOD (v294.1)
E	ALO	e2yheE6	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: ALO	ECOD (v294.1)
D	SapB_2,SapB_1	e2yheD3	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: SapB_2,SapB_1	ECOD (v294.1)
C	SapB_2,SapB_1	e2yheC3	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: SapB_2,SapB_1	ECOD (v294.1)
B	SapB_2,SapB_1	e2yheB3	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: SapB_2,SapB_1	ECOD (v294.1)
A	PK_Tyr_Ser-Thr	e2yheA2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: RIFT-related	T: FMN-binding split barrel 2	F: PK_Tyr_Ser-Thr	ECOD (v294.1)
A	Transgly	e2yheA3	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: Transgly	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.60.15.30	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
F	1.25.40.880	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Alkyl sulfatase, dimerisation domain	CATH (4.3.0)
F	3.30.1050.10	Alpha Beta	2-Layer Sandwich	Nonspecific Lipid-transfer Protein	Chain A	CATH (4.3.0)
E	3.60.15.30	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
E	1.25.40.880	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Alkyl sulfatase, dimerisation domain	CATH (4.3.0)
E	3.30.1050.10	Alpha Beta	2-Layer Sandwich	Nonspecific Lipid-transfer Protein	Chain A	CATH (4.3.0)
D	3.60.15.30	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
D	1.25.40.880	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Alkyl sulfatase, dimerisation domain	CATH (4.3.0)
D	3.30.1050.10	Alpha Beta	2-Layer Sandwich	Nonspecific Lipid-transfer Protein	Chain A	CATH (4.3.0)
C	3.60.15.30	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
C	1.25.40.880	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Alkyl sulfatase, dimerisation domain	CATH (4.3.0)
C	3.30.1050.10	Alpha Beta	2-Layer Sandwich	Nonspecific Lipid-transfer Protein	Chain A	CATH (4.3.0)
B	3.60.15.30	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
B	1.25.40.880	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Alkyl sulfatase, dimerisation domain	CATH (4.3.0)
B	3.30.1050.10	Alpha Beta	2-Layer Sandwich	Nonspecific Lipid-transfer Protein	Chain A	CATH (4.3.0)
A	3.60.15.30	Alpha Beta	4-Layer Sandwich	Metallo-beta-lactamase	Chain A	CATH (4.3.0)
A	1.25.40.880	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Alkyl sulfatase, dimerisation domain	CATH (4.3.0)
A	3.30.1050.10	Alpha Beta	2-Layer Sandwich	Nonspecific Lipid-transfer Protein	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	SEC-ALKYL SULFATASE	linear primary-alkylsulfatase activity hydrolase activity, acting on ester bonds hydrolase activity catalytic activity sulfuric ester hydrolase activity protein binding binding protein dimerization activity cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus response to stimulus oxoacid metabolic process cellular response to xenobiotic stimulus organic acid metabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus dodecyl sulfate metabolic process response to chemical sulfur compound metabolic process metabolic process cellular process small molecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR052195	Bacterial Alkyl/Aryl-Sulfatase	Family
A, B, C, D, E A, B, C, D, E, F	IPR029229	Alkyl sulfatase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001279	Metallo-beta-lactamase	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036527	SCP2 sterol-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR029228	Alkyl sulfatase dimerisation domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR044097	Alkyl/aryl-sulfatase Bds1/ SdsA1 , MBL-fold	Domain
A, B, C, D, E A, B, C, D, E, F	IPR038536	Alkyl/aryl-sulfatase, dimerisation domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.