2YF3 | pdb_00002yf3

Crystal structure of DR2231, the MazG-like protein from Deinococcus radiodurans, complex with manganese

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	P23-45_gp39_N	e2yf3B1	A: a/b three-layered sandwiches	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: P23-45_gp39_N	ECOD (v294.1)
E	P23-45_gp39_N	e2yf3E1	A: a/b three-layered sandwiches	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: P23-45_gp39_N	ECOD (v294.1)
F	P23-45_gp39_N	e2yf3F1	A: a/b three-layered sandwiches	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: P23-45_gp39_N	ECOD (v294.1)
D	P23-45_gp39_N	e2yf3D1	A: a/b three-layered sandwiches	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: P23-45_gp39_N	ECOD (v294.1)
C	P23-45_gp39_N	e2yf3C1	A: a/b three-layered sandwiches	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: P23-45_gp39_N	ECOD (v294.1)
A	P23-45_gp39_N	e2yf3A1	A: a/b three-layered sandwiches	X: jelly-roll	H: Galactose-binding domain-like	T: Galactose-binding domain-like	F: P23-45_gp39_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.3420.10	Mainly Alpha	Orthogonal Bundle	putative ntp pyrophosphohydrolase like fold	putative ntp pyrophosphohydrolase like domain	CATH (4.3.0)
E	1.10.3420.10	Mainly Alpha	Orthogonal Bundle	putative ntp pyrophosphohydrolase like fold	putative ntp pyrophosphohydrolase like domain	CATH (4.3.0)
F	1.10.3420.10	Mainly Alpha	Orthogonal Bundle	putative ntp pyrophosphohydrolase like fold	putative ntp pyrophosphohydrolase like domain	CATH (4.3.0)
D	1.10.3420.10	Mainly Alpha	Orthogonal Bundle	putative ntp pyrophosphohydrolase like fold	putative ntp pyrophosphohydrolase like domain	CATH (4.3.0)
C	1.10.3420.10	Mainly Alpha	Orthogonal Bundle	putative ntp pyrophosphohydrolase like fold	putative ntp pyrophosphohydrolase like domain	CATH (4.3.0)
A	1.10.3420.10	Mainly Alpha	Orthogonal Bundle	putative ntp pyrophosphohydrolase like fold	putative ntp pyrophosphohydrolase like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH)	Phosphoribosyl-ATP pyrophosphohydrolase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	MAZG-LIKE NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE	pyrophosphatase activity nucleoside triphosphate diphosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR021130	Phosphoribosyl-ATP pyrophosphohydrolase-like	Family
A, B, C, D, E A, B, C, D, E, F	IPR023292	NTP pyrophosphohydrolase-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.