2YAD | pdb_00002yad

BRICHOS domain of Surfactant protein C precursor protein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2 Family	BRICHOS domain-like	8045333	4004417	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	BRICHOS domain-like	8090251	3002423	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BRICHOS	e2yadA1	A: a/b three-layered sandwiches	X: Surfactant protein C BRICHOS domain	H: Surfactant protein C BRICHOS domain	T: Surfactant protein C BRICHOS domain	F: BRICHOS	ECOD (v294.1)
B	RACo_linker	e2yadB1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Reductive activator for corrinoid/iron-sulfur protein second domain	T: Reductive activator for corrinoid/iron-sulfur protein second domain	F: RACo_linker	ECOD (v294.1)
C	RACo_linker	e2yadC1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Reductive activator for corrinoid/iron-sulfur protein second domain	T: Reductive activator for corrinoid/iron-sulfur protein second domain	F: RACo_linker	ECOD (v294.1)
D	RACo_linker	e2yadD1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Reductive activator for corrinoid/iron-sulfur protein second domain	T: Reductive activator for corrinoid/iron-sulfur protein second domain	F: RACo_linker	ECOD (v294.1)
E	RACo_linker	e2yadE1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Reductive activator for corrinoid/iron-sulfur protein second domain	T: Reductive activator for corrinoid/iron-sulfur protein second domain	F: RACo_linker	ECOD (v294.1)
F	RACo_linker	e2yadF1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Reductive activator for corrinoid/iron-sulfur protein second domain	T: Reductive activator for corrinoid/iron-sulfur protein second domain	F: RACo_linker	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.390.150	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
B	3.30.390.150	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
C	3.30.390.150	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
D	3.30.390.150	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
E	3.30.390.150	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
F	3.30.390.150	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF04089	BRICHOS domain (BRICHOS)	BRICHOS domain	The BRICHOS domain is about 100 amino acids long. It is found in a variety of proteins implicated in dementia, respiratory distress and cancer. Its exact function is unknown; roles that have been proposed for it include (a) in targeting of the protei ...	The BRICHOS domain is about 100 amino acids long. It is found in a variety of proteins implicated in dementia, respiratory distress and cancer. Its exact function is unknown; roles that have been proposed for it include (a) in targeting of the protein to the secretory pathway, (b) intramolecular chaperone-like function, and (c) assisting the specialised intracellular protease processing system [1]. This C-terminal domain is embedded in the endoplasmic reticulum lumen, and binds to the N-terminal, transmembrane, SP_C, Pfam:PF08999, provided that it is in non-helical conformation. Thus the Brichos domain of proSP-C is a chaperone that induces alpha-helix formation of an aggregation-prone TM region [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	SURFACTANT PROTEIN C BRICHOS DOMAIN	identical protein binding protein binding binding	multicellular organismal process respiratory gaseous exchange by respiratory system	membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure lamellar body cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure lamellar body cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle alveolar lamellar body extracellular region multivesicular body lumen endosome membrane-enclosed lumen intracellular organelle lumen organelle lumen late endosome late endosome lumen endosome lumen multivesicular body clathrin-coated endocytic vesicle clathrin-coated vesicle coated vesicle endocytic vesicle organelle subcompartment membrane endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR018051	Surfactant-associated polypeptide, palmitoylation site	PTM
A, B, C, D, E A, B, C, D, E, F	IPR015091	Surfactant protein C, N-terminal propeptide	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001729	Pulmonary surfactant-associated protein C	Family
A, B, C, D, E A, B, C, D, E, F	IPR007084	BRICHOS domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: P11686	idiopathic pulmonary fibrosis newborn respiratory distress syndrome polycystic ovary syndrome surfactant metabolism dysfunction, pulmonary, 2 congenital diaphragmatic hernia lung adenocarcinoma osteosarcoma pituitary cancer pulmonary alveolar proteinosis Sjogren syndrome acute interstitial pneumonia desquamative interstitial pneumonia Hamman-Rich syndrome lung cancer malignant pancreatic neoplasm idiopathic pulmonary fibrosis newborn respiratory distress syndrome polycystic ovary syndrome surfactant metabolism dysfunction, pulmonary, 2 congenital diaphragmatic hernia lung adenocarcinoma osteosarcoma pituitary cancer pulmonary alveolar proteinosis Sjogren syndrome acute interstitial pneumonia desquamative interstitial pneumonia Hamman-Rich syndrome lung cancer malignant pancreatic neoplasm ovarian cancer heart disease interstitial lung disease lung carcinoma myocardial infarction non-small cell lung carcinoma pancreatic ductal adenocarcinoma psoriasis glioblastoma idiopathic interstitial pneumonia malignant glioma neonatal acute respiratory distress due to SP-B deficiency

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.