2Y21 | pdb_00002y21

The mechanisms of HAMP-mediated signaling in transmembrane receptors - the A291V mutant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d2y21l1	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
L	d2y21l2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
K	d2y21k_	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
J	d2y21j1	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
J	d2y21j2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
I	d2y21i_	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
H	d2y21h_	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
G	d2y21g_	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
F	d2y21f1	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
F	d2y21f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
E	d2y21e_	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
D	d2y21d1	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
D	d2y21d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
C	d2y21c_	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
B	d2y21b1	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
B	d2y21b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
A	d2y21a_	All alpha proteins	HAMP domain-like	HAMP domain-like	HAMP domain	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	HAMP domain-like	8033490	3001372	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L		e2y21L1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)
K	SapB_2,SapB_1	e2y21K2	A: alpha arrays	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: SapB_2,SapB_1	ECOD (v295)
J		e2y21J1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)
I		e2y21I1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)
H	SapB_2,SapB_1	e2y21H2	A: alpha arrays	X: Fusion glycoprotein F2	H: HTH	T: winged helix domain	F: SapB_2,SapB_1	ECOD (v295)
G		e2y21G1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)
F		e2y21F1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)
E		e2y21E1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)
D		e2y21D1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)
C		e2y21C1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)
B		e2y21B1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)
A		e2y21A1	A: alpha arrays	X: HTH	H: HTH	T: Catalytic domain of hepatitis C virus NS2-3 protease	F:	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
K	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
J	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
I	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
H	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
G	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
F	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
E	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
D	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
C	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
B	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A	1.10.8.500	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00672	HAMP domain (HAMP)	HAMP domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	HAMP	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding molecular sensor activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, nitrogenous group as acceptor phosphotransferase activity, alcohol group as acceptor protein histidine kinase activity transferase activity, transferring phosphorus-containing groups phosphorelay sensor kinase activity molecular function regulator activity catalytic activity cation binding metal ion binding identical protein binding protein binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003660	HAMP domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050398	Heme sensor protein HssS/ArlS-like	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.