2XSW | pdb_00002xsw

Crystal structure of human INPP5E

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Inositol polyphosphate 5-phosphatase (IPP5)	8067494	4003655	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DNase I-like	8067495	3000957	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	DNase I-like	8067495	3000957	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e2xswA1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	T: tRNA_int_endo	F:	ECOD (20:10:01)
B		e2xswB1	A: Alpha-beta plaits	X: Phage tail protein-like	H: Transmembrane protein 14A	T: FAD_binding_4	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (4.3.0)
B	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF22669	Endonuclease/Exonuclease/phosphatase family 2 (Exo_endo_phos2)	Endonuclease/Exonuclease/phosphatase family 2	This large family of proteins includes a number of nucleases and phosphatases such as DNAase I, Exonuclease III and Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase [1-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	72 KDA INOSITOL POLYPHOSPHATE 5-PHOSPHATASE	phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity phosphatidylinositol trisphosphate phosphatase activity phosphatidylinositol phosphate 5-phosphatase activity phosphatidylinositol phosphate phosphatase activity catalytic activity phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity phosphatidylinositol bisphosphate phosphatase activity phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity phosphatidylinositol-3,5-bisphosphate phosphatase activity inositol trisphosphate phosphatase activity inositol-polyphosphate 5-phosphatase activity phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity phosphatidylinositol trisphosphate phosphatase activity phosphatidylinositol phosphate 5-phosphatase activity phosphatidylinositol phosphate phosphatase activity catalytic activity phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity phosphatidylinositol bisphosphate phosphatase activity phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity phosphatidylinositol-3,5-bisphosphate phosphatase activity inositol trisphosphate phosphatase activity inositol-polyphosphate 5-phosphatase activity inositol phosphate phosphatase activity phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity phosphatidylinositol-4,5-bisphosphate phosphatase activity phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity	regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process phosphatidylinositol metabolic process dephosphorylation glycerophospholipid metabolic process lipid modification phospholipid metabolic process organophosphate metabolic process phosphatidylinositol dephosphorylation phospholipid dephosphorylation phosphate-containing compound metabolic process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process cellular response to stimulus regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction intracellular signaling cassette signal transduction regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication phosphatidylinositol 3-kinase/protein kinase B signal transduction response to inositol response to chemical response to oxygen-containing compound regulation of localization regulation of protein localization protein localization to cilium regulation of protein localization to cilium negative regulation of protein localization to cilium localization macromolecule localization protein localization to organelle intracellular protein localization negative regulation of protein localization organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly glycerophospholipid biosynthetic process lipid biosynthetic process phospholipid biosynthetic process phosphatidylinositol biosynthetic process glycerolipid biosynthetic process organophosphate biosynthetic process	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure axoneme ciliary plasm intracellular membraneless organelle intracellular organelle cytoskeleton membraneless organelle cytoplasm membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular anatomical structure axoneme ciliary plasm intracellular membraneless organelle intracellular organelle cytoskeleton membraneless organelle cytoplasm Golgi apparatus intracellular membrane-bounded organelle endomembrane system Golgi membrane membrane bounding membrane of organelle organelle membrane ruffle cell leading edge cytosol Golgi cisterna membrane Golgi apparatus subcompartment organelle subcompartment Golgi cisterna Golgi stack cell periphery plasma membrane nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000300	Inositol polyphosphate-related phosphatase	Domain
A, B	IPR042478	72kDa inositol polyphosphate 5-phosphatase	Family
A, B	IPR036691	Endonuclease/exonuclease/phosphatase superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9NRR6	MORM syndrome intellectual disability obesity disorder primary ciliary dyskinesia Joubert syndrome Joubert syndrome 1 COACH syndrome 1 Joubert syndrome with ocular defect penile disease Eye Diseases, Hereditary myocardial infarction polydactyly psoriasis ulcerative colitis acquired metabolic disease MORM syndrome intellectual disability obesity disorder primary ciliary dyskinesia Joubert syndrome Joubert syndrome 1 COACH syndrome 1 Joubert syndrome with ocular defect penile disease Eye Diseases, Hereditary myocardial infarction polydactyly psoriasis ulcerative colitis acquired metabolic disease rheumatoid arthritis ankylosing spondylitis IgA glomerulonephritis malignant ependymoma squamous cell carcinoma Crohn disease inflammatory bowel disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.