2XJO | pdb_00002xjo

Crystal structure of Streptococcus suis Dpr with nickel

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2xjoa_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
B	d2xjob_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
C	d2xjoc_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
D	d2xjod_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
E	d2xjoe_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
F	d2xjof_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
G	d2xjog_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
J	d2xjoj_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
K	d2xjok_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
L	d2xjol_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
I	d2xjoi_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)
H	d2xjoh_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Streptococcus suis ) [TaxId: 1307 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8041905	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FAD_binding_4	e2xjoA1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
B	FAD_binding_4	e2xjoB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
C	FAD_binding_4	e2xjoC1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
D	FAD_binding_4	e2xjoD1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Zn-dependent exopeptidases	T: Zn-dependent exopeptidases	F: FAD_binding_4	ECOD (v294.1)
E	DHDPS	e2xjoE1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DHDPS	ECOD (v294.1)
F	DHDPS	e2xjoF1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DHDPS	ECOD (v294.1)
G	DHDPS	e2xjoG1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DHDPS	ECOD (v294.1)
J	DHDPS	e2xjoJ1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DHDPS	ECOD (v294.1)
K	DHDPS	e2xjoK1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DHDPS	ECOD (v294.1)
L	DHDPS	e2xjoL1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DHDPS	ECOD (v294.1)
I	DHDPS	e2xjoI1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DHDPS	ECOD (v294.1)
H	DHDPS	e2xjoH1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SH3	T: Transmembrane protein 14A	F: DHDPS	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	DNA PROTECTION DURING STARVATION PROTEIN	oxidoreductase activity catalytic activity cation binding ferric iron binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002177	DNA-binding protein Dps	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008331	Ferritin/DPS domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.