2XCR | pdb_00002xcr

The 3.5A crystal structure of the catalytic core (B'A' region) of Staphylococcus aureus DNA Gyrase complexed with GSK299423 and DNA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth U]DNA_topoisoIV_1ste2xcrU11 A: alpha arraysX: HTHH: HTHT: wingedF: DNA_topoisoIV_1stECOD (1.6)
F [auth U]DNA_topoisoIV_3rde2xcrU12 A: alpha bundlesX: alpha-helical domain in type II DNA topoisomerase (From Topology)H: alpha-helical domain in type II DNA topoisomerase (From Topology)T: alpha-helical domain in type II DNA topoisomeraseF: DNA_topoisoIV_3rdECOD (1.6)
F [auth U]DNA_topoisoIV_2nd_1e2xcrU10 A: a+b two layersX: a+b domain in type II DNA topoisomerase (From Topology)H: a+b domain in type II DNA topoisomerase (From Topology)T: a+b domain in type II DNA topoisomeraseF: DNA_topoisoIV_2nd_1ECOD (1.6)
F [auth U]DNA_gyraseB_Ce2xcrU4 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: Toprim domainF: DNA_gyraseB_CECOD (1.6)
E [auth S]DNA_topoisoIV_1ste2xcrS11 A: alpha arraysX: HTHH: HTHT: wingedF: DNA_topoisoIV_1stECOD (1.6)
E [auth S]DNA_topoisoIV_3rde2xcrS12 A: alpha bundlesX: alpha-helical domain in type II DNA topoisomerase (From Topology)H: alpha-helical domain in type II DNA topoisomerase (From Topology)T: alpha-helical domain in type II DNA topoisomeraseF: DNA_topoisoIV_3rdECOD (1.6)
E [auth S]DNA_topoisoIV_2nd_1e2xcrS10 A: a+b two layersX: a+b domain in type II DNA topoisomerase (From Topology)H: a+b domain in type II DNA topoisomerase (From Topology)T: a+b domain in type II DNA topoisomeraseF: DNA_topoisoIV_2nd_1ECOD (1.6)
E [auth S]DNA_gyraseB_Ce2xcrS4 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: Toprim domainF: DNA_gyraseB_CECOD (1.6)
B [auth D]DNA_topoisoIV_1ste2xcrD11 A: alpha arraysX: HTHH: HTHT: wingedF: DNA_topoisoIV_1stECOD (1.6)
B [auth D]DNA_topoisoIV_3rde2xcrD12 A: alpha bundlesX: alpha-helical domain in type II DNA topoisomerase (From Topology)H: alpha-helical domain in type II DNA topoisomerase (From Topology)T: alpha-helical domain in type II DNA topoisomeraseF: DNA_topoisoIV_3rdECOD (1.6)
B [auth D]DNA_topoisoIV_2nd_1e2xcrD10 A: a+b two layersX: a+b domain in type II DNA topoisomerase (From Topology)H: a+b domain in type II DNA topoisomerase (From Topology)T: a+b domain in type II DNA topoisomeraseF: DNA_topoisoIV_2nd_1ECOD (1.6)
B [auth D]DNA_gyraseB_Ce2xcrD4 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: Toprim domainF: DNA_gyraseB_CECOD (1.6)
A [auth B]DNA_topoisoIV_1ste2xcrB11 A: alpha arraysX: HTHH: HTHT: wingedF: DNA_topoisoIV_1stECOD (1.6)
A [auth B]DNA_topoisoIV_3rde2xcrB12 A: alpha bundlesX: alpha-helical domain in type II DNA topoisomerase (From Topology)H: alpha-helical domain in type II DNA topoisomerase (From Topology)T: alpha-helical domain in type II DNA topoisomeraseF: DNA_topoisoIV_3rdECOD (1.6)
A [auth B]DNA_topoisoIV_2nd_1e2xcrB10 A: a+b two layersX: a+b domain in type II DNA topoisomerase (From Topology)H: a+b domain in type II DNA topoisomerase (From Topology)T: a+b domain in type II DNA topoisomeraseF: DNA_topoisoIV_2nd_1ECOD (1.6)
A [auth B]DNA_gyraseB_Ce2xcrB4 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: Toprim domainF: DNA_gyraseB_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F [auth U]3.40.50.670 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.2.0)
F [auth U]3.90.199.10 Alpha Beta Alpha-Beta Complex Topoisomerase II domain 5CATH (4.2.0)
F [auth U]3.30.1360.40 Alpha Beta 2-Layer Sandwich Gyrase A domain 2CATH (4.2.0)
F [auth U]1.10.268.10 Mainly Alpha Orthogonal Bundle Topoisomerase domain 3CATH (4.2.0)
E [auth S]3.40.50.670 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.2.0)
E [auth S]3.90.199.10 Alpha Beta Alpha-Beta Complex Topoisomerase II domain 5CATH (4.2.0)
E [auth S]3.30.1360.40 Alpha Beta 2-Layer Sandwich Gyrase A domain 2CATH (4.2.0)
E [auth S]1.10.268.10 Mainly Alpha Orthogonal Bundle Topoisomerase domain 3CATH (4.2.0)
B [auth D]3.40.50.670 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.2.0)
B [auth D]3.90.199.10 Alpha Beta Alpha-Beta Complex Topoisomerase II domain 5CATH (4.2.0)
B [auth D]3.30.1360.40 Alpha Beta 2-Layer Sandwich Gyrase A domain 2CATH (4.2.0)
B [auth D]1.10.268.10 Mainly Alpha Orthogonal Bundle Topoisomerase domain 3CATH (4.2.0)
A [auth B]3.40.50.670 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.2.0)
A [auth B]3.90.199.10 Alpha Beta Alpha-Beta Complex Topoisomerase II domain 5CATH (4.2.0)
A [auth B]3.30.1360.40 Alpha Beta 2-Layer Sandwich Gyrase A domain 2CATH (4.2.0)
A [auth B]1.10.268.10 Mainly Alpha Orthogonal Bundle Topoisomerase domain 3CATH (4.2.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth V],
H [auth W]		5'-D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP *GP*CP*TP)-3'---
C [auth E],
D [auth F]		5'-D(*5UA*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP *GP*CP*TP)-3'---
A [auth B],
B [auth D],
E [auth S],
F [auth U]		DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR011557DNA gyrase, subunit BFamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR034160DNA gyrase subunit B, TOPRIM domainDomain
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR018522DNA topoisomerase, type IIA, conserved siteConserved Site
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR013506DNA topoisomerase, type IIA, subunit B, domain 2Domain
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR013760DNA topoisomerase, type IIA-like domain superfamilyHomologous Superfamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR036890Histidine kinase/HSP90-like ATPase superfamilyHomologous Superfamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR006171TOPRIM domainDomain
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR000565DNA topoisomerase, type IIA, subunit BFamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR013759DNA topoisomerase, type IIA, subunit B, C-terminalHomologous Superfamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR001241DNA topoisomerase, type IIAFamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR002288DNA gyrase B subunit, C-terminalDomain
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR035516DNA gyrase/topoisomerase IV, subunit A, C-terminalHomologous Superfamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR050220Type II DNA TopoisomerasesFamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR013760DNA topoisomerase, type IIA-like domain superfamilyHomologous Superfamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR013757DNA topoisomerase, type IIA, alpha-helical domain superfamilyHomologous Superfamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR013758DNA topoisomerase, type IIA, domain A, alpha-betaHomologous Superfamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR005743DNA gyrase, subunit AFamily
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR006691DNA gyrase/topoisomerase IV, subunit A, C-terminal repeatRepeat
A [auth B],
B [auth D],
E [auth S],
F [auth U]		IPR002205DNA topoisomerase, type IIA, domain ADomain