Crystal structure of T. maritima GDP-mannose pyrophosphorylase in apo state.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | PBP | e2x5sB1 | A: alpha bundles | X: Lipocalins/Streptavidin | H: Immunoglobulin-related | T: PEBP-like | F: PBP | ECOD (develop294) |
| A | ManC_GMP_beta-helix | e2x5sA1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Cu,Zn superoxide dismutase-like | F: ManC_GMP_beta-helix | ECOD (develop294) |
| A | SpoU_methylase | e2x5sA2 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Cu,Zn superoxide dismutase-like | F: SpoU_methylase | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.90.550.10 | Alpha Beta | Alpha-Beta Complex | Spore Coat Polysaccharide Biosynthesis Protein SpsA | Chain A | CATH (4.3.0) |
| A | 3.90.550.10 | Alpha Beta | Alpha-Beta Complex | Spore Coat Polysaccharide Biosynthesis Protein SpsA | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF22640 | MannoseP isomerase/GMP-like beta-helix domain (ManC_GMP_beta-helix) | MannoseP isomerase/GMP-like beta-helix domain | This entry represents a left-handed beta-helix domain found at the C-terminal of Guanosine-diphospho-d-mannose Pyrophosphorylase (GMP) from Thermotoga maritima [1] and as a linker domain in mannose-1-phosphate guanylyltransferases, alginate biosynthe ... | Domain | |
| PF00483 | Nucleotidyl transferase (NTP_transferase) | Nucleotidyl transferase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR049577 | GDP-mannose pyrophosphorylase, N-terminal domain | Domain | |
| IPR054566 | MannoseP isomerase/GMP-like, beta-helix domain | Domain | |
| IPR005835 | Nucleotidyl transferase domain | Domain | |
| IPR029044 | Nucleotide-diphospho-sugar transferases | Homologous Superfamily | |
| IPR051161 | Mannose-6-phosphate isomerase type 2 | Family |














