2X5S | pdb_00002x5s

Crystal structure of T. maritima GDP-mannose pyrophosphorylase in apo state.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPBPe2x5sB1 A: alpha bundlesX: Lipocalins/StreptavidinH: Immunoglobulin-relatedT: PEBP-likeF: PBPECOD (develop294)
AManC_GMP_beta-helixe2x5sA1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: ManC_GMP_beta-helixECOD (develop294)
ASpoU_methylasee2x5sA2 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Cu,Zn superoxide dismutase-likeF: SpoU_methylaseECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.90.550.10 Alpha Beta Alpha-Beta Complex Spore Coat Polysaccharide Biosynthesis Protein SpsA Chain ACATH (4.3.0)
A3.90.550.10 Alpha Beta Alpha-Beta Complex Spore Coat Polysaccharide Biosynthesis Protein SpsA Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF22640MannoseP isomerase/GMP-like beta-helix domain (ManC_GMP_beta-helix)MannoseP isomerase/GMP-like beta-helix domainThis entry represents a left-handed beta-helix domain found at the C-terminal of Guanosine-diphospho-d-mannose Pyrophosphorylase (GMP) from Thermotoga maritima [1] and as a linker domain in mannose-1-phosphate guanylyltransferases, alginate biosynthe ...This entry represents a left-handed beta-helix domain found at the C-terminal of Guanosine-diphospho-d-mannose Pyrophosphorylase (GMP) from Thermotoga maritima [1] and as a linker domain in mannose-1-phosphate guanylyltransferases, alginate biosynthesis protein AlgA and xanthan biosynthesis protein XanB, among others, located between the Nucleotidyl transferase domain at the N-terminal (Pfam:PF00483) and the C-terminal isomerase cupin domain (Pfam:PF01050). This domain is composed of an alpha-helix followed by a short left-handed beta-helix. GMP forms a dimer in which two molecules associate through a tail-to-tail arrangement of this domain [1]..
Domain
A, B
PF00483Nucleotidyl transferase (NTP_transferase)Nucleotidyl transferase- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE -