2X5N | pdb_00002x5n

Crystal Structure of the SpRpn10 VWA domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2x5na_	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	Proteasome regulatory subunit Rpn10	FISSION YEAST (Schizosaccharomyces pombe ) [TaxId: 4896 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EFP_N	e2x5nA1	A: a/b three-layered sandwiches	X: Retrovirus capsid protein	H: Ubiquitin-related	T: Ubiquitin-like	F: EFP_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13519	von Willebrand factor type A domain (VWA_2)	von Willebrand factor type A domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	26S PROTEASOME REGULATORY SUBUNIT RPN10	polyubiquitin modification-dependent protein binding protein binding binding K48-linked polyubiquitin modification-dependent protein binding modification-dependent protein binding	cellular localization DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity stalled replication fork localization to nuclear periphery primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process localization DNA replication cellular process metabolic process macromolecule metabolic process replication fork processing cellular localization DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity stalled replication fork localization to nuclear periphery primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process localization DNA replication cellular process metabolic process macromolecule metabolic process replication fork processing mitotic DNA replication nuclear DNA replication cell cycle DNA replication mitotic cell cycle mitotic cell cycle process cell cycle DNA replication maintenance of fidelity mitotic recombination-dependent replication fork processing cell cycle mitotic DNA replication maintenance of fidelity cell cycle process catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process protein metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex catalytic complex peptidase complex proteasome regulatory particle proteasome regulatory particle, lid subcomplex proteasome accessory complex proteasome complex endopeptidase complex intracellular protein-containing complex proteasome regulatory particle, base subcomplex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex catalytic complex peptidase complex proteasome regulatory particle proteasome regulatory particle, lid subcomplex proteasome accessory complex proteasome complex endopeptidase complex intracellular protein-containing complex proteasome regulatory particle, base subcomplex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR027040	26S proteasome non-ATPase regulatory subunit 4	Family
A	IPR002035	von Willebrand factor, type A	Domain
A	IPR003903	Ubiquitin interacting motif	Conserved Site
A	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.